ENSCAFG00000009606 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000009606 T35080_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.818
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.818
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.818
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.797
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000014130 RRM 16 85
ENSCAFP00000014130 RRM 107 176

Links

Other RRM family RBPs
Other Canis familiaris RBPs

137 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.808
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.760
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.760
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.760
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.760
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.760
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.760
HNRNPA1 Homo sapiens ENSG00000135486 D 0.760
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.760
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.760
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.760
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.760
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.760
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.760
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.760
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.760
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.760
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.760
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.760
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.760
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.760
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.760
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.760
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.760
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.760
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.760
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.760
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.760
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.760
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.760
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.759
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.753
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.753
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.753
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.753
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.753
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.753
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.753
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.753
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.753
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.753
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.747
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.747
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.747
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.747
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.747
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.747
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.747
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.747
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.747
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.747
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.745
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.745
LOC100054206 Equus caballus ENSECAG00000006699 I 0.745
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.745
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.740
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.740
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.740
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.740
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.740
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.740
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.740
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.740
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.740
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.740
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.738
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.738
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.736
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.734
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.734
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.733
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.733
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.733
LOC785445 Bos taurus ENSBTAG00000025621 I 0.733
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.733
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.733
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.731
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.731
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.731
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.731
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.731
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.730
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.729
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.727
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.727
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.727
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.727
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.726
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.726
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.726
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.724
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.724
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.724
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.723
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.723
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.723
ENSETEG00000018059 Echinops telfairi ENSETEG00000018059 I 0.721
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.721
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.720
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.719
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.719
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.719
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.719
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.719
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.716
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.716
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.716
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.716
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.712
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.712
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.712
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.712
AAH45260 Xenopus laevis AAH45260 I 0.712
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.712
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.712
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.712
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.712
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.710
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.710
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.710
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.710
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.710
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.710
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.710
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.709
ENSCAFG00000020428 Canis familiaris ENSCAFG00000020428 I 0.709
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.707
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.707
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.706
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.706
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.705
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.705
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.705
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.705
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.704
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.703
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.703