CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TIA1
(
Sorex araneus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSARG00000001997
T41277_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
TIA1
M075_0.6
Homo sapiens
UUUUUBK
RNAcompete
Ray et al.(2013)
RNCMPT00077
0.834
TIA1
M156_0.6
Homo sapiens
WUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00165
0.834
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSARP00000001814
RRM
1
36
TAGNDPYCFVEFYEHRHAAAALAAMNGRKIMGKEVK
ENSSARP00000001814
RRM
67
137
VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR
ENSSARP00000001814
RRM
175
239
VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK
Links
Other
RRM
family RBPs
Other
Sorex araneus
RBPs
56 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TIAL1
Ornithorhynchus anatinus
ENSOANG00000004896
I
0.901
TIAL1
Callithrix jacchus
ENSCJAG00000019682
I
0.881
TIAL1
Homo sapiens
ENSG00000151923
D
0.881
TIAL1
Macaca mulatta
ENSMMUG00000001472
I
0.881
TIA1
Procavia capensis
ENSPCAG00000001859
I
0.859
TIA1
Monodelphis domestica
ENSMODG00000011515
I
0.843
TIA1
Dasypus novemcinctus
ENSDNOG00000016356
I
0.843
Ame_R002705
Ailuropoda melanoleuca
Ame_R002705
I
0.843
TIA1
Canis familiaris
ENSCAFG00000003341
I
0.843
TIAL1
Tursiops truncatus
ENSTTRG00000014574
I
0.842
TIA1
Gasterosteus aculeatus
ENSGACG00000013294
I
0.841
TIA1
Loxodonta africana
ENSLAFG00000003463
I
0.839
ENSACAG00000009648
Anolis carolinensis
ENSACAG00000009648
I
0.839
Q0VBZ6_BOVIN
Bos taurus
ENSBTAG00000019182
I
0.839
TIA1
Meleagris gallopavo
ENSMGAG00000003493
I
0.838
TIAL1
Gorilla gorilla
ENSGGOG00000001816
I
0.838
TIA1
Homo sapiens
ENSG00000116001
D
0.834
Q800W4_CHICK
Gallus gallus
ENSGALG00000013879
I
0.834
TIA1
Macaca mulatta
ENSMMUG00000001126
I
0.834
TIA1
Echinops telfairi
ENSETEG00000010021
I
0.834
TIA1
Oryctolagus cuniculus
ENSOCUG00000011204
I
0.834
TIA1
Otolemur garnettii
ENSOGAG00000010572
I
0.834
TIA1
Callithrix jacchus
ENSCJAG00000019278
I
0.834
TIA1
Pan troglodytes
ENSPTRG00000023495
I
0.834
TIA1
Pteropus vampyrus
ENSPVAG00000004846
I
0.834
TIA1
Cavia porcellus
ENSCPOG00000008327
I
0.834
TIA1
Tursiops truncatus
ENSTTRG00000001195
I
0.834
Tia1
Mus musculus
ENSMUSG00000071337
I
0.829
Tia1
Rattus norvegicus
ENSRNOG00000016813
I
0.824
ENSPPYG00000012326
Pongo pygmaeus
ENSPPYG00000012326
I
0.820
tia1
Xenopus tropicalis
ENSXETG00000008514
I
0.805
AAH80105
Xenopus laevis
AAH80105
I
0.800
TIAL1
Takifugu rubripes
ENSTRUG00000017931
I
0.795
TIA1
Tetraodon nigroviridis
ENSTNIG00000011433
I
0.795
tia1
Danio rerio
ENSDARG00000052536
I
0.795
TIA1
Takifugu rubripes
ENSTRUG00000015136
I
0.795
TIA1
Oryzias latipes
ENSORLG00000015642
I
0.795
TIAL1
Macropus eugenii
ENSMEUG00000013120
N
0.793
TIA1
Taeniopygia guttata
ENSTGUG00000017307
I
0.785
CAC95018
Xenopus laevis
CAC95018
I
0.785
AAH77169
Xenopus laevis
AAH77169
I
0.785
TIA1
Oryzias latipes
ENSORLG00000002529
I
0.775
Tia1
Dipodomys ordii
ENSDORG00000008601
I
0.771
TIA1
Tetraodon nigroviridis
ENSTNIG00000013470
I
0.771
TIA1
Takifugu rubripes
ENSTRUG00000005456
I
0.771
TIA1
Gasterosteus aculeatus
ENSGACG00000015800
I
0.771
TIAL1
Oryctolagus cuniculus
ENSOCUG00000003783
I
0.760
Tial1
Mus musculus
ENSMUSG00000030846
I
0.756
A1A4R7_BOVIN
Bos taurus
ENSBTAG00000004080
I
0.756
ENSSSCG00000010685
Sus scrofa
ENSSSCG00000010685
I
0.756
TIAL1
Equus caballus
ENSECAG00000009970
I
0.756
tial1
Danio rerio
ENSDARG00000009525
I
0.741
TIAL1
Anolis carolinensis
ENSACAG00000016986
I
0.741
ENSTBEG00000017228
Tupaia belangeri
ENSTBEG00000017228
I
0.722
tia1l
Danio rerio
ENSDARG00000026476
I
0.722
TIAL1
Gasterosteus aculeatus
ENSGACG00000003365
I
0.714