B9GR47_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0002s17560 T45464_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s17560.1 RRM 5 65
POPTR_0002s17560.1 RRM 96 159

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29742.m001371 Ricinus communis 29742.m001371 N 0.952
B9I911_POPTR Populus trichocarpa POPTR_0014s09730 N 0.944
cassava43625.valid.m1 Manihot esculenta cassava43625.valid.m1 N 0.936
cassava43624.valid.m1 Manihot esculenta cassava43624.valid.m1 N 0.936
Cucsa.259460 Cucumis sativus Cucsa.259460 N 0.864
PK15848.1 Cannabis sativa PK15848.1 N 0.824
ppa008137m Prunus persica ppa008137m N 0.824
mgf011632m Mimulus guttatus mgf011632m N 0.817
MDP0000387508 Malus x domestica MDP0000387508 N 0.816
XM_002882032.1 Arabidopsis lyrata fgenesh2_kg.4__2884__AT2G46610.1 N 0.816
MDP0000263938 Malus x domestica MDP0000263938 N 0.816
Medtr8g029490 Medicago truncatula Medtr8g029490 N 0.802
XM_002878371.1 Arabidopsis lyrata fgenesh2_kg.5__2682__AT3G61860.1 N 0.800
RS31 Arabidopsis thaliana AT3G61860-TAIR-G N 0.792
Glyma07g05900.1 Glycine max Glyma07g05900.1 N 0.786
Glyma16g02500.1 Glycine max Glyma16g02500.1 N 0.786
RS31a Arabidopsis thaliana AT2G46610-TAIR-G N 0.744
LOC_Os04g02870 Oryza sativa LOC_Os04g02870 N 0.712
BGIOSIBCE013939 Oryza indica BGIOSIBCE013939 N 0.712
BRADI5G01430 Brachypodium distachyon BRADI5G01430 N 0.704