PK15848.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK15848.1 T31707_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK15848.1 RRM 10 70
PK15848.1 RRM 99 162

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.259460 Cucumis sativus Cucsa.259460 N 0.904
cassava43624.valid.m1 Manihot esculenta cassava43624.valid.m1 N 0.864
cassava43625.valid.m1 Manihot esculenta cassava43625.valid.m1 N 0.864
ppa008137m Prunus persica ppa008137m N 0.856
mgf011632m Mimulus guttatus mgf011632m N 0.849
29742.m001371 Ricinus communis 29742.m001371 N 0.848
Glyma07g05900.1 Glycine max Glyma07g05900.1 N 0.841
Glyma16g02500.1 Glycine max Glyma16g02500.1 N 0.841
MDP0000263938 Malus x domestica MDP0000263938 N 0.832
MDP0000387508 Malus x domestica MDP0000387508 N 0.832
XM_002882032.1 Arabidopsis lyrata fgenesh2_kg.4__2884__AT2G46610.1 N 0.832
XM_002878371.1 Arabidopsis lyrata fgenesh2_kg.5__2682__AT3G61860.1 N 0.832
B9I911_POPTR Populus trichocarpa POPTR_0014s09730 N 0.824
RS31 Arabidopsis thaliana AT3G61860-TAIR-G N 0.824
B9GR47_POPTR Populus trichocarpa POPTR_0002s17560 N 0.824
Medtr8g029490 Medicago truncatula Medtr8g029490 N 0.810
RS31a Arabidopsis thaliana AT2G46610-TAIR-G N 0.776
PDK_20s1467051g001 Phoenix dactylifera PDK_20s1467051g001 N 0.740
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 0.732
cassava31733.valid.m1 Manihot esculenta cassava31733.valid.m1 N 0.732
B9ID09_POPTR Populus trichocarpa POPTR_0015s13880 N 0.709
Cucsa.042460 Cucumis sativus Cucsa.042460 N 0.705
BGIOSIBCE013939 Oryza indica BGIOSIBCE013939 N 0.704
LOC_Os04g02870 Oryza sativa LOC_Os04g02870 N 0.704
PK24775.1 Cannabis sativa PK24775.1 N 0.701
B9GPU7_POPTR Populus trichocarpa POPTR_0002s15490 N 0.701
B9IC71_POPTR Populus trichocarpa POPTR_0014s07270 N 0.701
B9I4G0_POPTR Populus trichocarpa POPTR_0012s13920 N 0.701