cassava43624.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava43624.valid.m1 T49410_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava43624.valid.m1 RRM 5 65
cassava43624.valid.m1 RRM 96 159

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava43625.valid.m1 Manihot esculenta cassava43625.valid.m1 N 1.000
29742.m001371 Ricinus communis 29742.m001371 N 0.944
B9I911_POPTR Populus trichocarpa POPTR_0014s09730 N 0.944
B9GR47_POPTR Populus trichocarpa POPTR_0002s17560 N 0.936
Cucsa.259460 Cucumis sativus Cucsa.259460 N 0.904
PK15848.1 Cannabis sativa PK15848.1 N 0.864
ppa008137m Prunus persica ppa008137m N 0.848
mgf011632m Mimulus guttatus mgf011632m N 0.841
Glyma07g05900.1 Glycine max Glyma07g05900.1 N 0.833
XM_002882032.1 Arabidopsis lyrata fgenesh2_kg.4__2884__AT2G46610.1 N 0.832
Glyma16g02500.1 Glycine max Glyma16g02500.1 N 0.825
MDP0000387508 Malus x domestica MDP0000387508 N 0.824
MDP0000263938 Malus x domestica MDP0000263938 N 0.824
Medtr8g029490 Medicago truncatula Medtr8g029490 N 0.817
XM_002878371.1 Arabidopsis lyrata fgenesh2_kg.5__2682__AT3G61860.1 N 0.816
RS31 Arabidopsis thaliana AT3G61860-TAIR-G N 0.808
RS31a Arabidopsis thaliana AT2G46610-TAIR-G N 0.760
cassava31733.valid.m1 Manihot esculenta cassava31733.valid.m1 N 0.724
cassava31732.valid.m1 Manihot esculenta cassava31732.valid.m1 N 0.724
LOC_Os04g02870 Oryza sativa LOC_Os04g02870 N 0.720
BGIOSIBCE013939 Oryza indica BGIOSIBCE013939 N 0.720
BRADI5G01430 Brachypodium distachyon BRADI5G01430 N 0.712
PK24775.1 Cannabis sativa PK24775.1 N 0.709
B9ID09_POPTR Populus trichocarpa POPTR_0015s13880 N 0.709
B9I4G0_POPTR Populus trichocarpa POPTR_0012s13920 N 0.701