cyn-13 (Caenorhabditis elegans)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Y116A8C.34 T46309_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Y116A8C.34.1 RRM 13 83

Links

Other RRM family RBPs
Other Caenorhabditis elegans RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBG00420 Caenorhabditis briggsae CBG00420 N 0.986
CRE28739 Caenorhabditis remanei CRE28739 N 0.986
CBN02296 Caenorhabditis brenneri CBN02296 N 0.972
CJA08769 Caenorhabditis japonica CJA08769 N 0.944
Ppa-cyn-13 Pristionchus pacificus PPA01466 N 0.845
LOAG_00807 Loa loa LOAG_00807 N 0.761
PPIE Monodelphis domestica ENSMODG00000017659 N 0.761
PPIE Gallus gallus ENSGALG00000013383 N 0.761
Bm1_52100 Brugia malayi Bm1_52100 N 0.761
WUBG_08965 Wuchereria bancrofti WUBG_08965 N 0.761
PPIE Taeniopygia guttata ENSTGUG00000001276 N 0.761
PPIE Oryzias latipes ENSORLG00000017469 N 0.761
PPIE Myotis lucifugus ENSMLUG00000016233 N 0.746
PPIE Macaca mulatta ENSMMUG00000018869 N 0.746
PPIE Loxodonta africana ENSLAFG00000028312 N 0.746
PPIE Tursiops truncatus ENSTTRG00000014385 N 0.746
PPIE Gorilla gorilla ENSGGOG00000015783 N 0.746
PPIE Microcebus murinus ENSMICG00000016676 N 0.746
PPIE Sorex araneus ENSSARG00000005703 N 0.746
PPIE Homo sapiens ENSG00000084072 N 0.746
PPIE Pan troglodytes ENSPTRG00000000577 N 0.746
PPIE Oryctolagus cuniculus ENSOCUG00000007665 N 0.746
Ppie Mus musculus ENSMUSG00000028651 N 0.746
Ppie Rattus norvegicus ENSRNOG00000014762 N 0.746
PPIE Pteropus vampyrus ENSPVAG00000002120 N 0.746
PPIE Sus scrofa ENSSSCG00000003664 N 0.746
LOC100054282 Equus caballus ENSECAG00000024285 N 0.746
PPIE Dasypus novemcinctus ENSDNOG00000002404 N 0.746
LOC100400545 Callithrix jacchus ENSCJAG00000002589 N 0.746
LOC100054084 Equus caballus ENSECAG00000008955 N 0.746
PPIE Canis familiaris ENSCAFG00000003031 N 0.746
PPIE Cavia porcellus ENSCPOG00000007365 N 0.736
PPIE Ornithorhynchus anatinus ENSOANG00000010003 N 0.732
estExt_gwp.C_1130042 Nematostella vectensis estExt_gwp.C_1130042 N 0.732
Q8QGJ6_FUGRU Takifugu rubripes ENSTRUG00000006308 N 0.732
PPIE Gasterosteus aculeatus ENSGACG00000007165 N 0.732
PPIE Tetraodon nigroviridis ENSTNIG00000016901 N 0.732
ISCW002449 Ixodes scapularis ISCW002449 N 0.732
ppie Danio rerio ENSDARG00000059270 N 0.732
PPIE Anolis carolinensis ENSACAG00000002688 N 0.732
estExt_gwp.C_5080019 Branchiostoma floridae estExt_gwp.C_5080019 N 0.718
estExt_gwp.C_2960041 Branchiostoma floridae estExt_gwp.C_2960041 N 0.718
estExt_fgenesh2_kg.C_sca_1160007 Lottia gigantea estExt_fgenesh2_kg.C_sca_1160007 N 0.718
BGIBMGA003414 Bombyx mori BGIBMGA003414 N 0.718
amel4_ncbi_hmm1701 Apis mellifera amel4_ncbi_hmm1701 N 0.718
amel4_ncbi_hmm1701 Tribolium castaneum amel4_ncbi_hmm1701 N 0.718
PPIE Felis catus ENSFCAG00000006027 N 0.718
ENSPPYG00000001501 Pongo pygmaeus ENSPPYG00000001501 N 0.718
Aqu1.226474 Amphimedon queenslandica Aqu1.226474 N 0.704
XP_001175534.1 Strongylocentrotus purpuratus XP_001175534.1 N 0.704
XP_799104.2 Strongylocentrotus purpuratus XP_799104.2 N 0.704
AAI23372 Xenopus laevis AAI23372 N 0.704
Ame_R020475 Ailuropoda melanoleuca Ame_R020475 N 0.704