estExt_fgenesh2_kg.C_sca_1160007 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_kg.C_sca_1160007 T50765_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_kg.C_sca_1160007 RRM 12 82

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

83 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PPIE Oryctolagus cuniculus ENSOCUG00000007665 N 0.915
LOC100054084 Equus caballus ENSECAG00000008955 N 0.915
LOC100054282 Equus caballus ENSECAG00000024285 N 0.915
PPIE Pan troglodytes ENSPTRG00000000577 N 0.915
PPIE Dasypus novemcinctus ENSDNOG00000002404 N 0.915
Ppie Mus musculus ENSMUSG00000028651 N 0.915
PPIE Loxodonta africana ENSLAFG00000028312 N 0.915
PPIE Microcebus murinus ENSMICG00000016676 N 0.915
PPIE Myotis lucifugus ENSMLUG00000016233 N 0.915
PPIE Macaca mulatta ENSMMUG00000018869 N 0.915
PPIE Pteropus vampyrus ENSPVAG00000002120 N 0.915
Ppie Rattus norvegicus ENSRNOG00000014762 N 0.915
LOC100400545 Callithrix jacchus ENSCJAG00000002589 N 0.915
PPIE Tursiops truncatus ENSTTRG00000014385 N 0.915
PPIE Canis familiaris ENSCAFG00000003031 N 0.915
PPIE Gorilla gorilla ENSGGOG00000015783 N 0.915
PPIE Homo sapiens ENSG00000084072 N 0.915
PPIE Sorex araneus ENSSARG00000005703 N 0.915
PPIE Sus scrofa ENSSSCG00000003664 N 0.915
PPIE Cavia porcellus ENSCPOG00000007365 N 0.903
PPIE Gallus gallus ENSGALG00000013383 N 0.901
ISCW002449 Ixodes scapularis ISCW002449 N 0.901
PPIE Monodelphis domestica ENSMODG00000017659 N 0.901
PPIE Taeniopygia guttata ENSTGUG00000001276 N 0.901
ENSPPYG00000001501 Pongo pygmaeus ENSPPYG00000001501 N 0.887
Ame_R020475 Ailuropoda melanoleuca Ame_R020475 N 0.887
AAI23372 Xenopus laevis AAI23372 N 0.887
Q8QGJ6_FUGRU Takifugu rubripes ENSTRUG00000006308 N 0.887
PPIE Tetraodon nigroviridis ENSTNIG00000016901 N 0.887
ppie Danio rerio ENSDARG00000059270 N 0.873
PPIE Ornithorhynchus anatinus ENSOANG00000010003 N 0.873
PPIE Oryzias latipes ENSORLG00000017469 N 0.873
PPIE Felis catus ENSFCAG00000006027 N 0.873
PPIE Anolis carolinensis ENSACAG00000002688 N 0.873
PHUM293600 Pediculus humanus PHUM293600 N 0.859
PPIE Gasterosteus aculeatus ENSGACG00000007165 N 0.859
XP_799104.2 Strongylocentrotus purpuratus XP_799104.2 N 0.859
XP_001175534.1 Strongylocentrotus purpuratus XP_001175534.1 N 0.859
BGIBMGA003414 Bombyx mori BGIBMGA003414 N 0.859
amel4_ncbi_hmm1701 Apis mellifera amel4_ncbi_hmm1701 N 0.845
estExt_gwp.C_2960041 Branchiostoma floridae estExt_gwp.C_2960041 N 0.845
XP_002154334.1 Hydra magnipapillata XP_002154334.1 N 0.845
estExt_gwp.C_5080019 Branchiostoma floridae estExt_gwp.C_5080019 N 0.845
amel4_ncbi_hmm1701 Tribolium castaneum amel4_ncbi_hmm1701 N 0.845
XP_002168022.1 Hydra magnipapillata XP_002168022.1 N 0.845
ENSCING00000003116 Ciona intestinalis ENSCING00000003116 N 0.845
amel4_ncbi_hmm44329 Apis mellifera amel4_ncbi_hmm44329 N 0.831
107863 Helobdella robusta 107863 N 0.817
ENSCSAVG00000006547 Ciona savignyi ENSCSAVG00000006547 N 0.803
nasonia_NCBI_hmm78483 Nasonia vitripennis nasonia_NCBI_hmm78483 N 0.803
estExt_gwp.C_1130042 Nematostella vectensis estExt_gwp.C_1130042 N 0.803
WUBG_08965 Wuchereria bancrofti WUBG_08965 N 0.789
Bm1_52100 Brugia malayi Bm1_52100 N 0.789
PPIE Erinaceus europaeus ENSEEUG00000010232 N 0.775
PPIE Spermophilus tridecemlineatus ENSSTOG00000010445 N 0.775
Ppa-cyn-13 Pristionchus pacificus PPA01466 N 0.775
Aqu1.226474 Amphimedon queenslandica Aqu1.226474 N 0.775
DGIL_AUG5s585g5t1 Acyrtosiphon pisum DGIL_AUG5s585g5t1 N 0.761
LOAG_00807 Loa loa LOAG_00807 N 0.761
CBN02296 Caenorhabditis brenneri CBN02296 N 0.746
AGAP009810 Anopheles gambiae AGAP009810 N 0.746
CAOG_01587 Capsaspora owczarzaki CAOG_01587 N 0.746
PPIE Macropus eugenii ENSMEUG00000005090 N 0.736
CRE28739 Caenorhabditis remanei CRE28739 N 0.732
AAEL013948 Aedes aegypti AAEL013948 N 0.732
GK21899 Drosophila willistoni FBgn0223884 N 0.718
GJ20579 Drosophila virilis FBgn0207718 N 0.718
GE11871 Drosophila yakuba FBgn0229657 N 0.718
GL11464 Drosophila persimilis FBgn0149073 N 0.718
SNAPOd2T00024835001 Oikopleura dioica SNAPOd2T00024835001 N 0.718
cyn-13 Caenorhabditis elegans Y116A8C.34 N 0.718
Smp_094810 Schistosoma mansoni Smp_094810 N 0.718
CJA08769 Caenorhabditis japonica CJA08769 N 0.718
CpipJ_CPIJ008841 Culex pipiens CpipJ_CPIJ008841 N 0.718
CBG00420 Caenorhabditis briggsae CBG00420 N 0.718
CPIJ008841 Culex quinquefasciatus CPIJ008841 N 0.718
GA18502-RA Drosophila pseudoobscura FBgn0078504 N 0.718
GH20760 Drosophila grimshawi FBgn0128223 N 0.718
GI20843 Drosophila mojavensis FBgn0143577 N 0.718
GG21795 Drosophila erecta FBgn0113973 N 0.704
GF11346 Drosophila ananassae FBgn0088386 N 0.704
cyp33 Drosophila melanogaster FBgn0028382 N 0.704
GD11288 Drosophila simulans FBgn0183037 N 0.704