CBN02296 (Caenorhabditis brenneri)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CBN02296 T33975_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
CBN02296 RRM 13 83

Links

Other RRM family RBPs
Other Caenorhabditis brenneri RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CRE28739 Caenorhabditis remanei CRE28739 N 0.986
cyn-13 Caenorhabditis elegans Y116A8C.34 N 0.972
CBG00420 Caenorhabditis briggsae CBG00420 N 0.958
CJA08769 Caenorhabditis japonica CJA08769 N 0.944
Ppa-cyn-13 Pristionchus pacificus PPA01466 N 0.873
PPIE Oryzias latipes ENSORLG00000017469 N 0.789
PPIE Monodelphis domestica ENSMODG00000017659 N 0.789
PPIE Gallus gallus ENSGALG00000013383 N 0.789
PPIE Taeniopygia guttata ENSTGUG00000001276 N 0.789
LOAG_00807 Loa loa LOAG_00807 N 0.789
WUBG_08965 Wuchereria bancrofti WUBG_08965 N 0.789
Bm1_52100 Brugia malayi Bm1_52100 N 0.789
Ppie Mus musculus ENSMUSG00000028651 N 0.775
PPIE Pan troglodytes ENSPTRG00000000577 N 0.775
PPIE Oryctolagus cuniculus ENSOCUG00000007665 N 0.775
PPIE Pteropus vampyrus ENSPVAG00000002120 N 0.775
PPIE Sus scrofa ENSSSCG00000003664 N 0.775
Ppie Rattus norvegicus ENSRNOG00000014762 N 0.775
PPIE Tursiops truncatus ENSTTRG00000014385 N 0.775
PPIE Sorex araneus ENSSARG00000005703 N 0.775
PPIE Homo sapiens ENSG00000084072 N 0.775
PPIE Canis familiaris ENSCAFG00000003031 N 0.775
PPIE Macaca mulatta ENSMMUG00000018869 N 0.775
LOC100054282 Equus caballus ENSECAG00000024285 N 0.775
LOC100054084 Equus caballus ENSECAG00000008955 N 0.775
PPIE Gorilla gorilla ENSGGOG00000015783 N 0.775
PPIE Dasypus novemcinctus ENSDNOG00000002404 N 0.775
PPIE Myotis lucifugus ENSMLUG00000016233 N 0.775
LOC100400545 Callithrix jacchus ENSCJAG00000002589 N 0.775
PPIE Microcebus murinus ENSMICG00000016676 N 0.775
PPIE Loxodonta africana ENSLAFG00000028312 N 0.775
PPIE Cavia porcellus ENSCPOG00000007365 N 0.764
PPIE Anolis carolinensis ENSACAG00000002688 N 0.761
estExt_gwp.C_1130042 Nematostella vectensis estExt_gwp.C_1130042 N 0.761
ISCW002449 Ixodes scapularis ISCW002449 N 0.761
ppie Danio rerio ENSDARG00000059270 N 0.761
PPIE Gasterosteus aculeatus ENSGACG00000007165 N 0.761
PPIE Ornithorhynchus anatinus ENSOANG00000010003 N 0.761
PPIE Tetraodon nigroviridis ENSTNIG00000016901 N 0.761
Q8QGJ6_FUGRU Takifugu rubripes ENSTRUG00000006308 N 0.761
estExt_gwp.C_5080019 Branchiostoma floridae estExt_gwp.C_5080019 N 0.746
estExt_gwp.C_2960041 Branchiostoma floridae estExt_gwp.C_2960041 N 0.746
BGIBMGA003414 Bombyx mori BGIBMGA003414 N 0.746
ENSPPYG00000001501 Pongo pygmaeus ENSPPYG00000001501 N 0.746
estExt_fgenesh2_kg.C_sca_1160007 Lottia gigantea estExt_fgenesh2_kg.C_sca_1160007 N 0.746
PPIE Felis catus ENSFCAG00000006027 N 0.746
AAI23372 Xenopus laevis AAI23372 N 0.732
XP_799104.2 Strongylocentrotus purpuratus XP_799104.2 N 0.732
XP_001175534.1 Strongylocentrotus purpuratus XP_001175534.1 N 0.732
Ame_R020475 Ailuropoda melanoleuca Ame_R020475 N 0.732
ENSCING00000003116 Ciona intestinalis ENSCING00000003116 N 0.718
CAOG_01587 Capsaspora owczarzaki CAOG_01587 N 0.718
amel4_ncbi_hmm1701 Tribolium castaneum amel4_ncbi_hmm1701 N 0.718
PHUM293600 Pediculus humanus PHUM293600 N 0.718
amel4_ncbi_hmm1701 Apis mellifera amel4_ncbi_hmm1701 N 0.718
107863 Helobdella robusta 107863 N 0.704
Aqu1.226474 Amphimedon queenslandica Aqu1.226474 N 0.704
XP_002154334.1 Hydra magnipapillata XP_002154334.1 N 0.704
XP_002168022.1 Hydra magnipapillata XP_002168022.1 N 0.704