AAI23372 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAI23372 T59623_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AAI23372 RRM 1 71

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

86 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PPIE Gallus gallus ENSGALG00000013383 N 0.944
PPIE Taeniopygia guttata ENSTGUG00000001276 N 0.944
PPIE Monodelphis domestica ENSMODG00000017659 N 0.944
LOC100400545 Callithrix jacchus ENSCJAG00000002589 N 0.930
PPIE Microcebus murinus ENSMICG00000016676 N 0.930
PPIE Canis familiaris ENSCAFG00000003031 N 0.930
PPIE Myotis lucifugus ENSMLUG00000016233 N 0.930
PPIE Loxodonta africana ENSLAFG00000028312 N 0.930
PPIE Gorilla gorilla ENSGGOG00000015783 N 0.930
LOC100054282 Equus caballus ENSECAG00000024285 N 0.930
LOC100054084 Equus caballus ENSECAG00000008955 N 0.930
PPIE Dasypus novemcinctus ENSDNOG00000002404 N 0.930
PPIE Tursiops truncatus ENSTTRG00000014385 N 0.930
PPIE Macaca mulatta ENSMMUG00000018869 N 0.930
PPIE Pteropus vampyrus ENSPVAG00000002120 N 0.930
Ppie Rattus norvegicus ENSRNOG00000014762 N 0.930
PPIE Sorex araneus ENSSARG00000005703 N 0.930
PPIE Sus scrofa ENSSSCG00000003664 N 0.930
PPIE Homo sapiens ENSG00000084072 N 0.930
PPIE Pan troglodytes ENSPTRG00000000577 N 0.930
Ppie Mus musculus ENSMUSG00000028651 N 0.930
PPIE Oryctolagus cuniculus ENSOCUG00000007665 N 0.930
PPIE Ornithorhynchus anatinus ENSOANG00000010003 N 0.930
PPIE Cavia porcellus ENSCPOG00000007365 N 0.917
PPIE Gasterosteus aculeatus ENSGACG00000007165 N 0.915
PPIE Oryzias latipes ENSORLG00000017469 N 0.915
Ame_R020475 Ailuropoda melanoleuca Ame_R020475 N 0.915
ENSPPYG00000001501 Pongo pygmaeus ENSPPYG00000001501 N 0.915
PPIE Anolis carolinensis ENSACAG00000002688 N 0.915
ppie Danio rerio ENSDARG00000059270 N 0.915
PPIE Tetraodon nigroviridis ENSTNIG00000016901 N 0.901
Q8QGJ6_FUGRU Takifugu rubripes ENSTRUG00000006308 N 0.901
estExt_fgenesh2_kg.C_sca_1160007 Lottia gigantea estExt_fgenesh2_kg.C_sca_1160007 N 0.887
PPIE Felis catus ENSFCAG00000006027 N 0.887
ISCW002449 Ixodes scapularis ISCW002449 N 0.859
XP_001175534.1 Strongylocentrotus purpuratus XP_001175534.1 N 0.859
XP_799104.2 Strongylocentrotus purpuratus XP_799104.2 N 0.859
PHUM293600 Pediculus humanus PHUM293600 N 0.859
amel4_ncbi_hmm1701 Tribolium castaneum amel4_ncbi_hmm1701 N 0.845
estExt_gwp.C_5080019 Branchiostoma floridae estExt_gwp.C_5080019 N 0.845
BGIBMGA003414 Bombyx mori BGIBMGA003414 N 0.845
amel4_ncbi_hmm44329 Apis mellifera amel4_ncbi_hmm44329 N 0.845
amel4_ncbi_hmm1701 Apis mellifera amel4_ncbi_hmm1701 N 0.845
estExt_gwp.C_1130042 Nematostella vectensis estExt_gwp.C_1130042 N 0.845
estExt_gwp.C_2960041 Branchiostoma floridae estExt_gwp.C_2960041 N 0.845
XP_002154334.1 Hydra magnipapillata XP_002154334.1 N 0.845
XP_002168022.1 Hydra magnipapillata XP_002168022.1 N 0.845
ENSCING00000003116 Ciona intestinalis ENSCING00000003116 N 0.845
nasonia_NCBI_hmm78483 Nasonia vitripennis nasonia_NCBI_hmm78483 N 0.817
107863 Helobdella robusta 107863 N 0.817
ENSCSAVG00000006547 Ciona savignyi ENSCSAVG00000006547 N 0.803
Ppa-cyn-13 Pristionchus pacificus PPA01466 N 0.789
Aqu1.226474 Amphimedon queenslandica Aqu1.226474 N 0.789
PPIE Macropus eugenii ENSMEUG00000005090 N 0.778
Bm1_52100 Brugia malayi Bm1_52100 N 0.775
DGIL_AUG5s585g5t1 Acyrtosiphon pisum DGIL_AUG5s585g5t1 N 0.775
WUBG_08965 Wuchereria bancrofti WUBG_08965 N 0.775
PPIE Spermophilus tridecemlineatus ENSSTOG00000010445 N 0.775
PPIE Erinaceus europaeus ENSEEUG00000010232 N 0.775
LOAG_00807 Loa loa LOAG_00807 N 0.746
CAOG_01587 Capsaspora owczarzaki CAOG_01587 N 0.746
CBN02296 Caenorhabditis brenneri CBN02296 N 0.732
Sjc_0059010 Schistosoma japonicum Sjc_0059010 N 0.718
estExt_fgeneshTA2_pm.C_70022 Trichoplax adhaerens estExt_fgeneshTA2_pm.C_70022 N 0.718
cyp33 Drosophila melanogaster FBgn0028382 N 0.718
GH20760 Drosophila grimshawi FBgn0128223 N 0.718
Smp_094810 Schistosoma mansoni Smp_094810 N 0.718
AGAP009810 Anopheles gambiae AGAP009810 N 0.718
CRE28739 Caenorhabditis remanei CRE28739 N 0.718
GE11871 Drosophila yakuba FBgn0229657 N 0.718
GI20843 Drosophila mojavensis FBgn0143577 N 0.718
GK21899 Drosophila willistoni FBgn0223884 N 0.718
GD11288 Drosophila simulans FBgn0183037 N 0.718
GJ20579 Drosophila virilis FBgn0207718 N 0.718
PPIE Otolemur garnettii ENSOGAG00000003620 N 0.708
Minc06529 Meloidogyne incognita Minc06529 N 0.704
GG21795 Drosophila erecta FBgn0113973 N 0.704
AAEL013948 Aedes aegypti AAEL013948 N 0.704
CBG00420 Caenorhabditis briggsae CBG00420 N 0.704
CJA08769 Caenorhabditis japonica CJA08769 N 0.704
GA18502-RA Drosophila pseudoobscura FBgn0078504 N 0.704
GF11346 Drosophila ananassae FBgn0088386 N 0.704
cyn-13 Caenorhabditis elegans Y116A8C.34 N 0.704
GM21798 Drosophila sechellia FBgn0176676 N 0.704
GL11464 Drosophila persimilis FBgn0149073 N 0.704
SNAPOd2T00024835001 Oikopleura dioica SNAPOd2T00024835001 N 0.704