Ppa-cyn-13 (Pristionchus pacificus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PPA01466 T45730_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PPA01466 RRM 15 85

Links

Other RRM family RBPs
Other Pristionchus pacificus RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBN02296 Caenorhabditis brenneri CBN02296 N 0.873
CJA08769 Caenorhabditis japonica CJA08769 N 0.859
CRE28739 Caenorhabditis remanei CRE28739 N 0.859
cyn-13 Caenorhabditis elegans Y116A8C.34 N 0.845
CBG00420 Caenorhabditis briggsae CBG00420 N 0.845
PPIE Monodelphis domestica ENSMODG00000017659 N 0.817
PPIE Gallus gallus ENSGALG00000013383 N 0.817
WUBG_08965 Wuchereria bancrofti WUBG_08965 N 0.817
Bm1_52100 Brugia malayi Bm1_52100 N 0.817
PPIE Oryzias latipes ENSORLG00000017469 N 0.817
LOAG_00807 Loa loa LOAG_00807 N 0.817
PPIE Taeniopygia guttata ENSTGUG00000001276 N 0.817
LOC100054084 Equus caballus ENSECAG00000008955 N 0.803
LOC100400545 Callithrix jacchus ENSCJAG00000002589 N 0.803
PPIE Homo sapiens ENSG00000084072 N 0.803
LOC100054282 Equus caballus ENSECAG00000024285 N 0.803
PPIE Canis familiaris ENSCAFG00000003031 N 0.803
PPIE Gasterosteus aculeatus ENSGACG00000007165 N 0.803
PPIE Loxodonta africana ENSLAFG00000028312 N 0.803
Ppie Rattus norvegicus ENSRNOG00000014762 N 0.803
PPIE Pteropus vampyrus ENSPVAG00000002120 N 0.803
PPIE Sorex araneus ENSSARG00000005703 N 0.803
PPIE Sus scrofa ENSSSCG00000003664 N 0.803
PPIE Tursiops truncatus ENSTTRG00000014385 N 0.803
PPIE Pan troglodytes ENSPTRG00000000577 N 0.803
PPIE Oryctolagus cuniculus ENSOCUG00000007665 N 0.803
PPIE Microcebus murinus ENSMICG00000016676 N 0.803
PPIE Dasypus novemcinctus ENSDNOG00000002404 N 0.803
PPIE Myotis lucifugus ENSMLUG00000016233 N 0.803
PPIE Macaca mulatta ENSMMUG00000018869 N 0.803
Ppie Mus musculus ENSMUSG00000028651 N 0.803
PPIE Gorilla gorilla ENSGGOG00000015783 N 0.803
PPIE Cavia porcellus ENSCPOG00000007365 N 0.792
PPIE Tetraodon nigroviridis ENSTNIG00000016901 N 0.789
AAI23372 Xenopus laevis AAI23372 N 0.789
ppie Danio rerio ENSDARG00000059270 N 0.789
PPIE Anolis carolinensis ENSACAG00000002688 N 0.789
PPIE Ornithorhynchus anatinus ENSOANG00000010003 N 0.789
Q8QGJ6_FUGRU Takifugu rubripes ENSTRUG00000006308 N 0.789
estExt_gwp.C_1130042 Nematostella vectensis estExt_gwp.C_1130042 N 0.775
ENSPPYG00000001501 Pongo pygmaeus ENSPPYG00000001501 N 0.775
estExt_fgenesh2_kg.C_sca_1160007 Lottia gigantea estExt_fgenesh2_kg.C_sca_1160007 N 0.775
ISCW002449 Ixodes scapularis ISCW002449 N 0.775
PPIE Felis catus ENSFCAG00000006027 N 0.761
BGIBMGA003414 Bombyx mori BGIBMGA003414 N 0.761
estExt_gwp.C_5080019 Branchiostoma floridae estExt_gwp.C_5080019 N 0.761
estExt_gwp.C_2960041 Branchiostoma floridae estExt_gwp.C_2960041 N 0.761
Ame_R020475 Ailuropoda melanoleuca Ame_R020475 N 0.761
Aqu1.226474 Amphimedon queenslandica Aqu1.226474 N 0.746
Minc06529 Meloidogyne incognita Minc06529 N 0.746
amel4_ncbi_hmm1701 Tribolium castaneum amel4_ncbi_hmm1701 N 0.732
ENSCING00000003116 Ciona intestinalis ENSCING00000003116 N 0.732
PHUM293600 Pediculus humanus PHUM293600 N 0.732
XP_001175534.1 Strongylocentrotus purpuratus XP_001175534.1 N 0.732
amel4_ncbi_hmm1701 Apis mellifera amel4_ncbi_hmm1701 N 0.732
XP_002168022.1 Hydra magnipapillata XP_002168022.1 N 0.732
XP_002154334.1 Hydra magnipapillata XP_002154334.1 N 0.732
XP_799104.2 Strongylocentrotus purpuratus XP_799104.2 N 0.732
CAOG_01587 Capsaspora owczarzaki CAOG_01587 N 0.732
107863 Helobdella robusta 107863 N 0.718
ENSCSAVG00000006547 Ciona savignyi ENSCSAVG00000006547 N 0.704
amel4_ncbi_hmm44329 Apis mellifera amel4_ncbi_hmm44329 N 0.704
estExt_fgeneshTA2_pm.C_70022 Trichoplax adhaerens estExt_fgeneshTA2_pm.C_70022 N 0.704