87505 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 87505 T48887_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.739
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.725
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
87505 RRM 10 78

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

120 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Sjc_0036900 Schistosoma japonicum Sjc_0036900 I 0.797
Smp_138880 Schistosoma mansoni Smp_138880 I 0.797
Smp_139980 Schistosoma mansoni Smp_139980 I 0.783
e_gw1.11.67.1 Lottia gigantea e_gw1.11.67.1 I 0.771
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.768
rbfox1l Danio rerio ENSDARG00000021184 I 0.768
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.768
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.768
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.768
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.768
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.768
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.768
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.768
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.754
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.754
RBFOX3 Equus caballus ENSECAG00000023811 I 0.754
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.754
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.754
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.754
RBFOX3 Homo sapiens ENSG00000167281 I 0.754
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.754
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.754
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.754
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.754
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.754
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.754
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.754
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.754
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.754
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.754
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.754
FP236187.1 Danio rerio ENSDARG00000010083 I 0.754
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.754
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.754
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.754
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.754
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.754
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.754
gw1.3.244.1 Capitella teleta gw1.3.244.1 I 0.754
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.739
a2bp1 Danio rerio ENSDARG00000014746 D 0.739
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.739
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.739
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.725
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.725
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.725
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.725
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.725
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.725
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.725
ISCW013123 Ixodes scapularis ISCW013123 I 0.725
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.725
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.725
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.725
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.725
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.725
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.725
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.725
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.725
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.725
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.725
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.725
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.725
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.725
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.725
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.725
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.725
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.725
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.725
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.725
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.725
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.725
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.725
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.725
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.725
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.725
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.725
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.725
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.725
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.725
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.725
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.725
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.725
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.725
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.725
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.725
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.725
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.725
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.725
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.725
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.725
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.725
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.725
LOC100066233 Equus caballus ENSECAG00000012667 I 0.725
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.725
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.725
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.725
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.725
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.725
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.725
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.725
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.725
A2BP1 Homo sapiens ENSG00000078328 D 0.725
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.725
LOC100069362 Equus caballus ENSECAG00000018923 I 0.725
A2BP1 Gallus gallus ENSGALG00000007366 I 0.725
RBFOX2 Homo sapiens ENSG00000100320 I 0.725
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.725
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.725
RBM9 Gallus gallus ENSGALG00000012540 I 0.725
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.710
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.710
A4F5G6 Xenopus laevis A4F5G6 I 0.710
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.710
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.710
AGAP006089 Anopheles gambiae AGAP006089 I 0.710
CAL91351 Xenopus laevis CAL91351 I 0.710
CAL91350 Xenopus laevis CAL91350 I 0.710
AAI69563 Xenopus laevis AAI69563 I 0.710
AAI55921 Xenopus laevis AAI55921 I 0.710