e_gw.534.13.1 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw.534.13.1 T50217_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.899
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.899
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.884
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.870
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.534.13.1 RRM 22 90

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 1.000
ISCW013123 Ixodes scapularis ISCW013123 I 0.928
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.913
FP236187.1 Danio rerio ENSDARG00000010083 I 0.913
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.913
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.913
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.913
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.899
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.899
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.899
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.899
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.899
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.899
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.899
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.899
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.899
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.899
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.899
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.899
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.899
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.899
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.899
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.899
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.899
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.899
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.899
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.899
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.899
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.899
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.899
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.899
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.899
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.899
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.899
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.899
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.899
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.899
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.899
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.899
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.899
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.899
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.899
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.899
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.899
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.899
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.899
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.899
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.899
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.899
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.899
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.899
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.899
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.899
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.899
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.899
RBM9 Gallus gallus ENSGALG00000012540 I 0.899
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.899
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.899
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.899
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.899
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.899
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.899
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.899
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.899
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.899
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.899
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.899
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.899
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.899
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.899
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.899
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.899
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.899
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.899
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.899
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.899
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.899
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.899
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.899
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.899
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.899
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.899
RBFOX2 Homo sapiens ENSG00000100320 I 0.899
A2BP1 Homo sapiens ENSG00000078328 D 0.899
RBFOX3 Homo sapiens ENSG00000167281 I 0.899
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.899
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.899
LOC100066233 Equus caballus ENSECAG00000012667 I 0.899
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.899
LOC100069362 Equus caballus ENSECAG00000018923 I 0.899
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.899
RBFOX3 Equus caballus ENSECAG00000023811 I 0.899
A2BP1 Gallus gallus ENSGALG00000007366 I 0.899
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.884
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.884
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.884
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.884
PHUM098700 Pediculus humanus PHUM098700 I 0.884
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.884
a2bp1 Danio rerio ENSDARG00000014746 D 0.884
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.884
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.884
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.884
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.870
a2bp1 Drosophila melanogaster FBgn0052062 D 0.870
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.870
A4F5G6 Xenopus laevis A4F5G6 I 0.870
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.870
GF10597 Drosophila ananassae FBgn0087638 I 0.870
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.870
GH14949 Drosophila grimshawi FBgn0122424 I 0.870
GJ13667 Drosophila virilis FBgn0200888 I 0.870
GK12272 Drosophila willistoni FBgn0214282 I 0.870
GD14245 Drosophila simulans FBgn0185930 I 0.870
GM25214 Drosophila sechellia FBgn0180074 I 0.870
CAL91350 Xenopus laevis CAL91350 I 0.870
GI11474 Drosophila mojavensis FBgn0134235 I 0.870
GG15438 Drosophila erecta FBgn0107689 I 0.870
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.870
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.870
AGAP006089 Anopheles gambiae AGAP006089 I 0.870
GE21749 Drosophila yakuba FBgn0238995 I 0.870
CAL91351 Xenopus laevis CAL91351 I 0.870
AAEL017168 Aedes aegypti AAEL017168 I 0.870
rbfox1l Danio rerio ENSDARG00000021184 I 0.870
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.855
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.855
AAI55921 Xenopus laevis AAI55921 I 0.855
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.855
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.855
AAI69563 Xenopus laevis AAI69563 I 0.855
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.841
e_gw1.11.67.1 Lottia gigantea e_gw1.11.67.1 I 0.829
ENSCING00000013912 Ciona intestinalis ENSCING00000013912 I 0.812
gw1.3.244.1 Capitella teleta gw1.3.244.1 I 0.812
Smp_139980 Schistosoma mansoni Smp_139980 I 0.797
Bm1_08900 Brugia malayi Bm1_08900 I 0.783
LOAG_04679 Loa loa LOAG_04679 I 0.783
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.783
RBFOX2 Gorilla gorilla ENSGGOG00000015598 I 0.768
RBFOX2 Spermophilus tridecemlineatus ENSSTOG00000014841 I 0.768
Smp_138880 Schistosoma mansoni Smp_138880 I 0.768
Sjc_0036900 Schistosoma japonicum Sjc_0036900 I 0.768
gw.34.129.1 Nematostella vectensis gw.34.129.1 I 0.768
CBN11651 Caenorhabditis brenneri CBN11651 I 0.739
RBFOX1 Felis catus ENSFCAG00000008241 I 0.739
CJA09998 Caenorhabditis japonica CJA09998 I 0.739
87505 Helobdella robusta 87505 I 0.725
SNAPOd2T00019047001 Oikopleura dioica SNAPOd2T00019047001 I 0.725
fox-1 Caenorhabditis elegans T07D1.4 D 0.725
CBG02108 Caenorhabditis briggsae CBG02108 I 0.725
CRE07377 Caenorhabditis remanei CRE07377 I 0.725
RBFOX2 Macropus eugenii ENSMEUG00000001547 I 0.710