Sjc_0036900 (Schistosoma japonicum)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Sjc_0036900 T54802_0.6 SDSPB (2008-Sep-5)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.783
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.783
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.783
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.768
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CPRT0000003480 RRM 93 161

Links

Other RRM family RBPs
Other Schistosoma japonicum RBPs

142 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Smp_138880 Schistosoma mansoni Smp_138880 I 1.000
Smp_139980 Schistosoma mansoni Smp_139980 I 0.841
e_gw1.11.67.1 Lottia gigantea e_gw1.11.67.1 I 0.829
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.812
gw1.3.244.1 Capitella teleta gw1.3.244.1 I 0.812
PHUM098700 Pediculus humanus PHUM098700 I 0.812
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.797
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.797
AAEL017168 Aedes aegypti AAEL017168 I 0.797
87505 Helobdella robusta 87505 I 0.797
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.797
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.783
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.783
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.783
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.783
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.783
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.783
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.783
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.783
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.783
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.783
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.783
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.783
RBM9 Gallus gallus ENSGALG00000012540 I 0.783
A2BP1 Gallus gallus ENSGALG00000007366 I 0.783
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.783
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.783
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.783
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.783
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.783
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.783
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.783
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.783
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.783
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.783
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.783
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.783
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.783
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.783
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.783
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.783
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.783
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.783
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.783
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.783
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.783
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.783
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.783
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.783
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.783
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.783
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.783
GF10597 Drosophila ananassae FBgn0087638 I 0.783
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.783
GJ13667 Drosophila virilis FBgn0200888 I 0.783
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.783
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.783
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.783
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.783
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.783
GD14245 Drosophila simulans FBgn0185930 I 0.783
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.783
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.783
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.783
ISCW013123 Ixodes scapularis ISCW013123 I 0.783
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.783
AGAP006089 Anopheles gambiae AGAP006089 I 0.783
GE21749 Drosophila yakuba FBgn0238995 I 0.783
GK12272 Drosophila willistoni FBgn0214282 I 0.783
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.783
GM25214 Drosophila sechellia FBgn0180074 I 0.783
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.783
GH14949 Drosophila grimshawi FBgn0122424 I 0.783
LOC100069362 Equus caballus ENSECAG00000018923 I 0.783
LOC100066233 Equus caballus ENSECAG00000012667 I 0.783
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.783
A2BP1 Homo sapiens ENSG00000078328 D 0.783
a2bp1 Drosophila melanogaster FBgn0052062 D 0.783
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.783
RBFOX2 Homo sapiens ENSG00000100320 I 0.783
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.783
GG15438 Drosophila erecta FBgn0107689 I 0.783
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.783
GI11474 Drosophila mojavensis FBgn0134235 I 0.783
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.783
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.768
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.768
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.768
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.768
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.768
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.768
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.768
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.768
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.768
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.768
a2bp1 Danio rerio ENSDARG00000014746 D 0.768
FP236187.1 Danio rerio ENSDARG00000010083 I 0.768
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.768
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.768
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.754
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.754
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.754
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.754
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.754
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.754
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.754
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.754
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.754
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.754
rbfox1l Danio rerio ENSDARG00000021184 I 0.754
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.754
RBFOX3 Equus caballus ENSECAG00000023811 I 0.754
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.754
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.754
A4F5G6 Xenopus laevis A4F5G6 I 0.754
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.754
AAI55921 Xenopus laevis AAI55921 I 0.754
AAI69563 Xenopus laevis AAI69563 I 0.754
CAL91351 Xenopus laevis CAL91351 I 0.754
CAL91350 Xenopus laevis CAL91350 I 0.754
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.754
RBFOX3 Homo sapiens ENSG00000167281 I 0.754
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.754
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.754
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.754
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.754
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.754
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.754
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.754
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.754
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.754
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.754
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.754
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.754
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.754
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.739
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.725
gw.34.129.1 Nematostella vectensis gw.34.129.1 I 0.725
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.710
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.710
LOAG_04679 Loa loa LOAG_04679 I 0.710
Bm1_08900 Brugia malayi Bm1_08900 I 0.710