e_gw1.11.67.1 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw1.11.67.1 T49712_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.843
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.843
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.829
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.11.67.1 RRM 13 82

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

142 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.3.244.1 Capitella teleta gw1.3.244.1 I 0.886
Smp_139980 Schistosoma mansoni Smp_139980 I 0.871
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.843
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.843
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.843
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.843
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.843
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.843
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.843
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.843
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.843
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.843
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.843
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.843
RBM9 Gallus gallus ENSGALG00000012540 I 0.843
A2BP1 Gallus gallus ENSGALG00000007366 I 0.843
RBFOX2 Homo sapiens ENSG00000100320 I 0.843
A2BP1 Homo sapiens ENSG00000078328 D 0.843
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.843
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.843
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.843
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.843
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.843
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.843
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.843
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.843
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.843
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.843
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.843
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.843
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.843
ISCW013123 Ixodes scapularis ISCW013123 I 0.843
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.843
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.843
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.843
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.843
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.843
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.843
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.843
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.843
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.843
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.843
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.843
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.843
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.843
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.843
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.843
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.843
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.843
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.843
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.843
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.843
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.843
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.843
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.843
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.843
LOC100069362 Equus caballus ENSECAG00000018923 I 0.843
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.843
LOC100066233 Equus caballus ENSECAG00000012667 I 0.843
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.843
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.843
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.843
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.843
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.829
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.829
Smp_138880 Schistosoma mansoni Smp_138880 I 0.829
FP236187.1 Danio rerio ENSDARG00000010083 I 0.829
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.829
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.829
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.829
Sjc_0036900 Schistosoma japonicum Sjc_0036900 I 0.829
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.829
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.829
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.829
a2bp1 Danio rerio ENSDARG00000014746 D 0.829
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.829
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.814
CAL91350 Xenopus laevis CAL91350 I 0.814
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.814
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.814
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.814
CAL91351 Xenopus laevis CAL91351 I 0.814
A4F5G6 Xenopus laevis A4F5G6 I 0.814
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.814
a2bp1 Drosophila melanogaster FBgn0052062 D 0.814
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.814
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.814
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.814
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.814
GF10597 Drosophila ananassae FBgn0087638 I 0.814
GH14949 Drosophila grimshawi FBgn0122424 I 0.814
AAI55921 Xenopus laevis AAI55921 I 0.814
AAEL017168 Aedes aegypti AAEL017168 I 0.814
GG15438 Drosophila erecta FBgn0107689 I 0.814
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.814
AAI69563 Xenopus laevis AAI69563 I 0.814
GD14245 Drosophila simulans FBgn0185930 I 0.814
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.814
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.814
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.814
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.814
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.814
GK12272 Drosophila willistoni FBgn0214282 I 0.814
GE21749 Drosophila yakuba FBgn0238995 I 0.814
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.814
RBFOX3 Homo sapiens ENSG00000167281 I 0.814
PHUM098700 Pediculus humanus PHUM098700 I 0.814
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.814
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.814
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.814
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.814
GM25214 Drosophila sechellia FBgn0180074 I 0.814
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.814
RBFOX3 Equus caballus ENSECAG00000023811 I 0.814
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.814
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.814
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.814
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.814
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.814
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.814
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.814
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.800
GJ13667 Drosophila virilis FBgn0200888 I 0.800
GI11474 Drosophila mojavensis FBgn0134235 I 0.800
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.800
AGAP006089 Anopheles gambiae AGAP006089 I 0.800
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.800
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.800
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.800
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.800
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.800
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.800
rbfox1l Danio rerio ENSDARG00000021184 I 0.786
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.786
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.786
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.786
87505 Helobdella robusta 87505 I 0.771
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.743
RBFOX2 Macropus eugenii ENSMEUG00000001547 I 0.714
RBFOX2 Gorilla gorilla ENSGGOG00000015598 I 0.714
gw.34.129.1 Nematostella vectensis gw.34.129.1 I 0.714
RBFOX2 Spermophilus tridecemlineatus ENSSTOG00000014841 I 0.700