Smp_139980 (Schistosoma mansoni)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Smp_139980 T58674_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.797
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.797
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.797
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.797
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Smp_139980 RRM 227 295

Links

Other RRM family RBPs
Other Schistosoma mansoni RBPs

141 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.11.67.1 Lottia gigantea e_gw1.11.67.1 I 0.871
gw1.3.244.1 Capitella teleta gw1.3.244.1 I 0.870
Smp_138880 Schistosoma mansoni Smp_138880 I 0.841
ISCW013123 Ixodes scapularis ISCW013123 I 0.841
Sjc_0036900 Schistosoma japonicum Sjc_0036900 I 0.841
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.812
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.812
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.812
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.812
RBFOX3 Homo sapiens ENSG00000167281 I 0.812
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.812
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.812
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.812
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.812
RBFOX3 Equus caballus ENSECAG00000023811 I 0.812
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.812
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.812
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.812
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.812
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.812
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.812
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.812
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.812
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.812
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.812
rbfox1l Danio rerio ENSDARG00000021184 I 0.812
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.812
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.812
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.812
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.812
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.812
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.812
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.812
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.812
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.812
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.812
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.812
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.812
FP236187.1 Danio rerio ENSDARG00000010083 I 0.812
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.797
GK12272 Drosophila willistoni FBgn0214282 I 0.797
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.797
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.797
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.797
GD14245 Drosophila simulans FBgn0185930 I 0.797
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.797
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.797
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.797
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.797
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.797
GM25214 Drosophila sechellia FBgn0180074 I 0.797
GE21749 Drosophila yakuba FBgn0238995 I 0.797
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.797
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.797
GG15438 Drosophila erecta FBgn0107689 I 0.797
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.797
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.797
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.797
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.797
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.797
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.797
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.797
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.797
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.797
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.797
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.797
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.797
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.797
GF10597 Drosophila ananassae FBgn0087638 I 0.797
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.797
a2bp1 Drosophila melanogaster FBgn0052062 D 0.797
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.797
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.797
GH14949 Drosophila grimshawi FBgn0122424 I 0.797
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.797
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.797
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.797
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.797
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.797
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.797
a2bp1 Danio rerio ENSDARG00000014746 D 0.797
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.797
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.797
LOC100069362 Equus caballus ENSECAG00000018923 I 0.797
LOC100066233 Equus caballus ENSECAG00000012667 I 0.797
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.797
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.797
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.797
CAL91351 Xenopus laevis CAL91351 I 0.797
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.797
CAL91350 Xenopus laevis CAL91350 I 0.797
AAI69563 Xenopus laevis AAI69563 I 0.797
AAI55921 Xenopus laevis AAI55921 I 0.797
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.797
AAEL017168 Aedes aegypti AAEL017168 I 0.797
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.797
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.797
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.797
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.797
A2BP1 Homo sapiens ENSG00000078328 D 0.797
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.797
RBFOX2 Homo sapiens ENSG00000100320 I 0.797
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.797
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.797
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.797
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.797
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.797
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.797
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.797
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.797
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.797
A4F5G6 Xenopus laevis A4F5G6 I 0.797
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.797
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.797
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.797
RBM9 Gallus gallus ENSGALG00000012540 I 0.797
A2BP1 Gallus gallus ENSGALG00000007366 I 0.797
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.797
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.797
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.797
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.797
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.783
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.783
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.783
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.783
87505 Helobdella robusta 87505 I 0.783
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.783
PHUM098700 Pediculus humanus PHUM098700 I 0.783
GJ13667 Drosophila virilis FBgn0200888 I 0.783
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.783
AGAP006089 Anopheles gambiae AGAP006089 I 0.783
GI11474 Drosophila mojavensis FBgn0134235 I 0.783
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.768
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.768
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.768
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.768
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.768
gw.34.129.1 Nematostella vectensis gw.34.129.1 I 0.739
ENSCING00000013912 Ciona intestinalis ENSCING00000013912 I 0.725
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.725
SNAPOd2T00019047001 Oikopleura dioica SNAPOd2T00019047001 I 0.710