RBFOX1 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000013477 T42338_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.971
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.971
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.971
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.899
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000034369 RRM 117 185
ENSTRUP00000034370 RRM 135 203
ENSTRUP00000034371 RRM 135 203
ENSTRUP00000034372 RRM 135 203
ENSTRUP00000034373 RRM 127 195
ENSTRUP00000034374 RRM 118 186
ENSTRUP00000034375 RRM 55 123
ENSTRUP00000034376 RRM 135 203

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

154 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.971
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.971
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.971
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.971
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.971
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.971
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.971
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.971
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.971
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.971
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.971
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.971
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.971
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.971
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.971
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.971
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.971
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.971
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.971
RBM9 Gallus gallus ENSGALG00000012540 I 0.971
LOC100069362 Equus caballus ENSECAG00000018923 I 0.971
LOC100066233 Equus caballus ENSECAG00000012667 I 0.971
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.971
A2BP1 Gallus gallus ENSGALG00000007366 I 0.971
RBFOX2 Homo sapiens ENSG00000100320 I 0.971
A2BP1 Homo sapiens ENSG00000078328 D 0.971
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.971
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.971
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.971
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.971
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.971
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.971
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.971
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.971
a2bp1 Danio rerio ENSDARG00000014746 D 0.971
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.971
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.971
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.971
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.971
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.971
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.971
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.971
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.971
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.971
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.971
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.971
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.971
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.971
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.971
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.971
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.971
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.971
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.971
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.971
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.971
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.971
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.971
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.971
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.971
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.971
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.971
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.957
CAL91351 Xenopus laevis CAL91351 I 0.957
CAL91350 Xenopus laevis CAL91350 I 0.957
A4F5G6 Xenopus laevis A4F5G6 I 0.957
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.957
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.957
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.957
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.957
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.942
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.942
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.942
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.942
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.942
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.942
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.942
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.942
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.942
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.942
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.942
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.942
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.942
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.942
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.942
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.942
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.942
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.942
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.942
AAI69563 Xenopus laevis AAI69563 I 0.942
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.942
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.942
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.942
AAI55921 Xenopus laevis AAI55921 I 0.942
RBFOX3 Homo sapiens ENSG00000167281 I 0.942
FP236187.1 Danio rerio ENSDARG00000010083 I 0.942
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.942
RBFOX3 Equus caballus ENSECAG00000023811 I 0.942
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.928
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.928
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.928
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.928
rbfox1l Danio rerio ENSDARG00000021184 I 0.913
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.913
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.913
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.913
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.913
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.913
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.913
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.913
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.913
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.913
PHUM098700 Pediculus humanus PHUM098700 I 0.899
GJ13667 Drosophila virilis FBgn0200888 I 0.899
GE21749 Drosophila yakuba FBgn0238995 I 0.899
GK12272 Drosophila willistoni FBgn0214282 I 0.899
GD14245 Drosophila simulans FBgn0185930 I 0.899
GM25214 Drosophila sechellia FBgn0180074 I 0.899
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.899
AGAP006089 Anopheles gambiae AGAP006089 I 0.899
GI11474 Drosophila mojavensis FBgn0134235 I 0.899
a2bp1 Drosophila melanogaster FBgn0052062 D 0.899
AAEL017168 Aedes aegypti AAEL017168 I 0.899
GF10597 Drosophila ananassae FBgn0087638 I 0.899
GH14949 Drosophila grimshawi FBgn0122424 I 0.899
GG15438 Drosophila erecta FBgn0107689 I 0.899
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.884
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.884
ISCW013123 Ixodes scapularis ISCW013123 I 0.884
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.884
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.884
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.870
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.870
gw1.3.244.1 Capitella teleta gw1.3.244.1 I 0.841
RBFOX2 Spermophilus tridecemlineatus ENSSTOG00000014841 I 0.826
ENSCING00000013912 Ciona intestinalis ENSCING00000013912 I 0.826
RBFOX2 Gorilla gorilla ENSGGOG00000015598 I 0.826
e_gw1.11.67.1 Lottia gigantea e_gw1.11.67.1 I 0.814
Smp_139980 Schistosoma mansoni Smp_139980 I 0.797
RBFOX2 Macropus eugenii ENSMEUG00000001547 I 0.783
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.768
RBFOX1 Felis catus ENSFCAG00000008241 I 0.768
Bm1_08900 Brugia malayi Bm1_08900 I 0.768
LOAG_04679 Loa loa LOAG_04679 I 0.768
CJA09998 Caenorhabditis japonica CJA09998 I 0.754
CRE07377 Caenorhabditis remanei CRE07377 I 0.754
Smp_138880 Schistosoma mansoni Smp_138880 I 0.754
CBG02108 Caenorhabditis briggsae CBG02108 I 0.754
Sjc_0036900 Schistosoma japonicum Sjc_0036900 I 0.754
gw.34.129.1 Nematostella vectensis gw.34.129.1 I 0.754
fox-1 Caenorhabditis elegans T07D1.4 D 0.754
CBN11651 Caenorhabditis brenneri CBN11651 I 0.739
87505 Helobdella robusta 87505 I 0.725
SNAPOd2T00019047001 Oikopleura dioica SNAPOd2T00019047001 I 0.710