RBFOX3 (Erinaceus europaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSEEUG00000013974 T36839_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.913
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.913
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.913
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.841
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.710
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000012745 RRM 101 169

Links

Other RRM family RBPs
Other Erinaceus europaeus RBPs

151 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.971
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.971
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.971
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.971
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.971
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.971
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.971
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.971
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.971
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.971
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.971
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.971
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.971
RBFOX3 Homo sapiens ENSG00000167281 I 0.971
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.971
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.971
RBFOX3 Equus caballus ENSECAG00000023811 I 0.971
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.971
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.957
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.957
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.957
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.957
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.957
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.957
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.957
FP236187.1 Danio rerio ENSDARG00000010083 I 0.957
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.957
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.957
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.957
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.928
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.913
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.913
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.913
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.913
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.913
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.913
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.913
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.913
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.913
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.913
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.913
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.913
a2bp1 Danio rerio ENSDARG00000014746 D 0.913
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.913
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.913
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.913
rbfox1l Danio rerio ENSDARG00000021184 I 0.913
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.913
LOC100069362 Equus caballus ENSECAG00000018923 I 0.913
LOC100066233 Equus caballus ENSECAG00000012667 I 0.913
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.913
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.913
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.913
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.913
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.913
CAL91351 Xenopus laevis CAL91351 I 0.913
CAL91350 Xenopus laevis CAL91350 I 0.913
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.913
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.913
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.913
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.913
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.913
A4F5G6 Xenopus laevis A4F5G6 I 0.913
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.913
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.913
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.913
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.913
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.913
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.913
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.913
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.913
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.913
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.913
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.913
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.913
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.913
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.913
RBM9 Gallus gallus ENSGALG00000012540 I 0.913
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.913
A2BP1 Gallus gallus ENSGALG00000007366 I 0.913
RBFOX2 Homo sapiens ENSG00000100320 I 0.913
A2BP1 Homo sapiens ENSG00000078328 D 0.913
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.913
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.913
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.913
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.913
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.913
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.913
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.913
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.913
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.913
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.913
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.913
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.913
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.913
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.913
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.913
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.913
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.913
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.913
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.913
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.913
AAI55921 Xenopus laevis AAI55921 I 0.899
AAI69563 Xenopus laevis AAI69563 I 0.899
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.899
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.899
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.899
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.884
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.884
ISCW013123 Ixodes scapularis ISCW013123 I 0.870
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.870
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.870
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.870
AGAP006089 Anopheles gambiae AGAP006089 I 0.855
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.855
AAEL017168 Aedes aegypti AAEL017168 I 0.855
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.855
a2bp1 Drosophila melanogaster FBgn0052062 D 0.841
GF10597 Drosophila ananassae FBgn0087638 I 0.841
GD14245 Drosophila simulans FBgn0185930 I 0.841
GG15438 Drosophila erecta FBgn0107689 I 0.841
GK12272 Drosophila willistoni FBgn0214282 I 0.841
PHUM098700 Pediculus humanus PHUM098700 I 0.841
GE21749 Drosophila yakuba FBgn0238995 I 0.841
GH14949 Drosophila grimshawi FBgn0122424 I 0.841
GJ13667 Drosophila virilis FBgn0200888 I 0.841
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.841
GI11474 Drosophila mojavensis FBgn0134235 I 0.841
GM25214 Drosophila sechellia FBgn0180074 I 0.841
gw1.3.244.1 Capitella teleta gw1.3.244.1 I 0.826
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.826
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.826
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.826
e_gw1.11.67.1 Lottia gigantea e_gw1.11.67.1 I 0.814
ENSCING00000013912 Ciona intestinalis ENSCING00000013912 I 0.812
RBFOX2 Gorilla gorilla ENSGGOG00000015598 I 0.783
Smp_139980 Schistosoma mansoni Smp_139980 I 0.783
RBFOX2 Spermophilus tridecemlineatus ENSSTOG00000014841 I 0.783
gw.34.129.1 Nematostella vectensis gw.34.129.1 I 0.768
87505 Helobdella robusta 87505 I 0.754
RBFOX1 Felis catus ENSFCAG00000008241 I 0.739
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.725
Bm1_08900 Brugia malayi Bm1_08900 I 0.725
LOAG_04679 Loa loa LOAG_04679 I 0.725
Smp_138880 Schistosoma mansoni Smp_138880 I 0.725
Sjc_0036900 Schistosoma japonicum Sjc_0036900 I 0.725
RBFOX2 Macropus eugenii ENSMEUG00000001547 I 0.725
CBG02108 Caenorhabditis briggsae CBG02108 I 0.710
fox-1 Caenorhabditis elegans T07D1.4 D 0.710
CJA09998 Caenorhabditis japonica CJA09998 I 0.710
CRE07377 Caenorhabditis remanei CRE07377 I 0.710