Minc01580 (Meloidogyne incognita)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Minc01580 T57759_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.846
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.783
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.757
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.713
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Minc01580 RRM 14 84
Minc01580 RRM 101 172

Links

Other RRM family RBPs
Other Meloidogyne incognita RBPs

97 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Minc12926 Meloidogyne incognita Minc12926 I 1.000
Minc02568 Meloidogyne incognita Minc02568 I 1.000
LOAG_01189 Loa loa LOAG_01189 I 0.860
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.860
CJA19238 Caenorhabditis japonica CJA19238 I 0.860
Bm1_43460 Brugia malayi Bm1_43460 I 0.860
CRE01639 Caenorhabditis remanei CRE01639 I 0.853
sap-49 Caenorhabditis elegans C08B11.5 D 0.846
CBN06124 Caenorhabditis brenneri CBN06124 I 0.846
CBG13349 Caenorhabditis briggsae CBG13349 I 0.839
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.804
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.804
AGAP001538 Anopheles gambiae AGAP001538 I 0.797
PHUM263440 Pediculus humanus PHUM263440 I 0.797
ISCW010601 Ixodes scapularis ISCW010601 I 0.790
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.790
99199 Helobdella robusta 99199 I 0.790
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.790
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.790
GI16317 Drosophila mojavensis FBgn0139065 I 0.783
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.783
GH17589 Drosophila grimshawi FBgn0125059 I 0.783
Smp_067420 Schistosoma mansoni Smp_067420 D 0.783
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.783
GJ15655 Drosophila virilis FBgn0202845 I 0.783
GL21313 Drosophila persimilis FBgn0158906 I 0.776
GG19577 Drosophila erecta FBgn0111779 I 0.776
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.776
GF20385 Drosophila ananassae FBgn0097392 I 0.776
GK19717 Drosophila willistoni FBgn0221715 I 0.776
AAEL013795 Aedes aegypti AAEL013795 I 0.776
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.776
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.776
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.776
GE16738 Drosophila yakuba FBgn0234234 I 0.776
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.769
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.769
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.769
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.769
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.769
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.769
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.769
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.769
Spx Drosophila melanogaster FBgn0015818 I 0.769
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.769
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.769
GM12470 Drosophila sechellia FBgn0167407 I 0.769
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.769
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.769
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.769
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.769
LOC100054350 Equus caballus ENSECAG00000024737 I 0.769
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.769
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.769
SF3B4 Homo sapiens ENSG00000143368 I 0.769
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.769
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.769
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.769
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.769
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.769
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.769
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.769
SF3B4 Gallus gallus ENSGALG00000013352 I 0.769
sf3b4 Danio rerio ENSDARG00000018574 D 0.769
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.769
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.769
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.769
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.769
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.769
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.769
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.769
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.769
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.769
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.769
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.762
AAH77458 Xenopus laevis AAH77458 I 0.762
AAH45264 Xenopus laevis AAH45264 I 0.762
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.762
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.762
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.748
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.748
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.748
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.748
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.738
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.734
30183.m001303 Ricinus communis 30183.m001303 I 0.720
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.713
ppa007508m Prunus persica ppa007508m I 0.713
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.713
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.713
MDP0000131129 Malus x domestica MDP0000131129 I 0.706
MDP0000320945 Malus x domestica MDP0000320945 I 0.706
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.706
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.706
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.706
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.706
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.706