Aqu1.214461 (Amphimedon queenslandica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Aqu1.214461 T48970_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.826
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.811
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.790
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Aqu1.214461 RRM 15 85
Aqu1.214461 RRM 102 173

Links

Other RRM family RBPs
Other Amphimedon queenslandica RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 1.000
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.839
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.839
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.839
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.839
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.832
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.832
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.832
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.832
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.832
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.832
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.832
SF3B4 Gallus gallus ENSGALG00000013352 I 0.832
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.832
sf3b4 Danio rerio ENSDARG00000018574 D 0.832
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.832
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.832
LOC100054350 Equus caballus ENSECAG00000024737 I 0.832
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.832
SF3B4 Homo sapiens ENSG00000143368 I 0.832
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.832
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.832
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.832
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.832
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.832
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.832
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.832
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.832
99199 Helobdella robusta 99199 I 0.832
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.832
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.832
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.832
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.832
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.832
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.832
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.832
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.832
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.832
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.832
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.832
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.832
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.832
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.832
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.832
AAH77458 Xenopus laevis AAH77458 I 0.825
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.825
PHUM263440 Pediculus humanus PHUM263440 I 0.825
AAH45264 Xenopus laevis AAH45264 I 0.825
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.825
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.818
ISCW010601 Ixodes scapularis ISCW010601 I 0.818
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.818
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.818
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.814
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.811
AAEL013795 Aedes aegypti AAEL013795 I 0.811
Smp_067420 Schistosoma mansoni Smp_067420 D 0.811
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.811
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.811
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.811
GL21313 Drosophila persimilis FBgn0158906 I 0.797
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.797
AGAP001538 Anopheles gambiae AGAP001538 I 0.797
GH17589 Drosophila grimshawi FBgn0125059 I 0.797
GI16317 Drosophila mojavensis FBgn0139065 I 0.797
GJ15655 Drosophila virilis FBgn0202845 I 0.797
GK19717 Drosophila willistoni FBgn0221715 I 0.790
GF20385 Drosophila ananassae FBgn0097392 I 0.790
GE16738 Drosophila yakuba FBgn0234234 I 0.790
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.790
GG19577 Drosophila erecta FBgn0111779 I 0.790
CBN06124 Caenorhabditis brenneri CBN06124 I 0.790
sap-49 Caenorhabditis elegans C08B11.5 D 0.790
CRE01639 Caenorhabditis remanei CRE01639 I 0.783
Spx Drosophila melanogaster FBgn0015818 I 0.783
GM12470 Drosophila sechellia FBgn0167407 I 0.783
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.783
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.769
CJA19238 Caenorhabditis japonica CJA19238 I 0.769
CBG13349 Caenorhabditis briggsae CBG13349 I 0.769
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.762
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.762
LOAG_01189 Loa loa LOAG_01189 I 0.762
Bm1_43460 Brugia malayi Bm1_43460 I 0.762
Minc02568 Meloidogyne incognita Minc02568 I 0.748
Minc12926 Meloidogyne incognita Minc12926 I 0.748
Minc01580 Meloidogyne incognita Minc01580 I 0.748
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.748
30183.m001303 Ricinus communis 30183.m001303 I 0.734
PK08238.1 Cannabis sativa PK08238.1 I 0.734
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.727
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.727
MDP0000320945 Malus x domestica MDP0000320945 I 0.727
MDP0000131129 Malus x domestica MDP0000131129 I 0.727
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.727
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.720
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.720
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.720
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.720
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.713
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.713
ppa007508m Prunus persica ppa007508m I 0.713
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.713
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.706
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.706
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.706
SB01G020190 Sorghum bicolor Sb01g020190 I 0.706
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.706
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.706
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.706