SFPQ (Otolemur garnettii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSOGAG00000027710 T084685_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
SFPQ
M20431_2.00		 Otolemur garnettii NGURGKKU JPLE
Sasse et al.(2025)
RM_Oto.gar_ENSOGAG00000027710 		0.008

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
1.000
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
1.000
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
1.000
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
1.000
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.730
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.008
(88.41%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000017737 RRM 116 193
ENSOGAP00000017737 RRM 190 258

RNA contacting residues

Links

Other RRM family RBPs
Other Otolemur garnettii RBPs

186 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSAMEG00000004776 Ailuropoda melanoleuca ENSAMEG00000004776 I 0.000
ENSCSAG00000010161 Chlorocebus sabaeus ENSCSAG00000010161 I 0.000
ENSMPUG00000006511 Mustela putorius furo ENSMPUG00000006511 I 0.000
ENSNLEG00000012307 Nomascus leucogenys ENSNLEG00000012307 I 0.000
ENSOARG00000002547 Ovis aries ENSOARG00000002547 I 0.000
ENSP00000223073 Macaca fascicularis ENSP00000223073 I 0.000
ENSP00000223073-D1 Bos grunniens ENSP00000223073-D1 I 0.000
ENSPANG00000022295 Papio anubis ENSPANG00000022295 I 0.000
ENSPPYG00000017975 Pongo abelii ENSPPYG00000017975 I 0.000
ENSSTOG00000002169 Ictidomys tridecemlineatus ENSSTOG00000002169 I 0.000
Myotis_brandtii_RBM28_10012817 Myotis brandtii Myotis_brandtii_RBM28_10012817 I 0.000
RBM28 Monodelphis domestica ENSMODG00000015151 I 0.000
RBM28 Tursiops truncatus ENSTTRG00000013647 I 0.000
Rbm28 Rattus norvegicus ENSRNOG00000005468 I 0.000
RBM28 Pan troglodytes ENSPTRG00000019659 I 0.000
RBM28 Oryctolagus cuniculus ENSOCUG00000003009 I 0.000
Rbm28 Mus musculus ENSMUSG00000029701 I 0.000
RBM28 Myotis lucifugus ENSMLUG00000002186 I 0.000
RBM28 Microcebus murinus ENSMICG00000000107 I 0.000
RBM28 Loxodonta africana ENSLAFG00000010717 I 0.000
RBM28 Homo sapiens ENSG00000106344 D 0.000
RBM28 Felis catus ENSFCAG00000000946 I 0.000
RBM28 Echinops telfairi ENSETEG00000007130 I 0.000
RBM28 Equus caballus ENSECAG00000007745 I 0.000
RBM28 Dasypus novemcinctus ENSDNOG00000001124 I 0.000
RBM28 Cavia porcellus ENSCPOG00000006253 I 0.000
RBM28 Callithrix jacchus ENSCJAG00000017731 I 0.000
RBM28 Canis familiaris ENSCAFG00000001667 I 0.000
RBM28 Bos taurus ENSBTAG00000017001 I 0.000