RBM28 (Echinops telfairi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSETEG00000007130 T079871_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
RBM28
M10094_2.00		 Echinops telfairi NGWGUAGW JPLE
Sasse et al.(2025)
RM_Ech.tel_ENSETEG00000007130 		0.010

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM28
M00630_2.00 		Homo sapiens GUGGGUCUCGK HTR-SELEX
Jolma et al.(2020)
0.870
RBM28
M00629_2.00 		Homo sapiens KRGGYYGWGCGGUGG HTR-SELEX
Jolma et al.(2020)
0.870
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
0.870
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.010
(85.65%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000005792 RRM 3 82
ENSETEP00000005792 RRM 110 192
ENSETEP00000005792 RRM 329 411
ENSETEP00000005792 RRM 474 565

RNA contacting residues

Links

Other RRM family RBPs
Other Echinops telfairi RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM28 Loxodonta africana ENSLAFG00000010717 I 0.907
RBM28 Oryctolagus cuniculus ENSOCUG00000003009 I 0.878
ENSMPUG00000006511 Mustela putorius furo ENSMPUG00000006511 I 0.875
ENSAMEG00000004776 Ailuropoda melanoleuca ENSAMEG00000004776 I 0.875
RBM28 Tursiops truncatus ENSTTRG00000013647 I 0.874
RBM28 Dasypus novemcinctus ENSDNOG00000001124 I 0.874
RBM28 Felis catus ENSFCAG00000000946 I 0.872
RBM28 Myotis lucifugus ENSMLUG00000002186 I 0.872
RBM28 Equus caballus ENSECAG00000007745 I 0.871
RBM28 Homo sapiens ENSG00000106344 D 0.870
ENSPPYG00000017975 Pongo abelii ENSPPYG00000017975 I 0.870
RBM28 Pan troglodytes ENSPTRG00000019659 I 0.870
RBM28 Canis familiaris ENSCAFG00000001667 I 0.870
ENSCSAG00000010161 Chlorocebus sabaeus ENSCSAG00000010161 I 0.870
ENSNLEG00000012307 Nomascus leucogenys ENSNLEG00000012307 I 0.867
ENSSTOG00000002169 Ictidomys tridecemlineatus ENSSTOG00000002169 I 0.865
ENSPANG00000022295 Papio anubis ENSPANG00000022295 I 0.864
RBM28 Cavia porcellus ENSCPOG00000006253 I 0.858
Rbm28 Mus musculus ENSMUSG00000029701 I 0.856
Rbm28 Rattus norvegicus ENSRNOG00000005468 I 0.850
RBM28 Monodelphis domestica ENSMODG00000015151 I 0.847
ENSP00000223073 Macaca fascicularis ENSP00000223073 I 0.838
Myotis_brandtii_RBM28_10012817 Myotis brandtii Myotis_brandtii_RBM28_10012817 I 0.832
RBM28 Microcebus murinus ENSMICG00000000107 I 0.820
ENSOARG00000002547 Ovis aries ENSOARG00000002547 I 0.815
RBM28 Bos taurus ENSBTAG00000017001 I 0.815
RBM28 Callithrix jacchus ENSCJAG00000017731 I 0.815
ENSP00000223073-D1 Bos grunniens ENSP00000223073-D1 I 0.812
RBM28 Sorex araneus ENSSARG00000008303 I 0.791
RBM28 Gorilla gorilla ENSGGOG00000004644 I 0.730
ENSSHAG00000017017 Sarcophilus harrisii ENSSHAG00000017017 I 0.730
ENSMEUG00000009611 Macropus eugenii ENSMEUG00000009611 I 0.721
RBM28 Erinaceus europaeus ENSEEUG00000002389 I 0.720
ENSTSYG00000002892 Tarsius syrichta ENSTSYG00000002892 I 0.706