RBM28 (Bos taurus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSBTAG00000017001 T077420_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
RBM28
M04395_2.00		 Bos taurus NGWGUAGW JPLE
Sasse et al.(2025)
RM_Bos.tau_ENSBTAG00000017001 		0.007

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM28
M00630_2.00 		Homo sapiens GUGGGUCUCGK HTR-SELEX
Jolma et al.(2020)
0.875
RBM28
M00629_2.00 		Homo sapiens KRGGYYGWGCGGUGG HTR-SELEX
Jolma et al.(2020)
0.875
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
0.875
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.007
(86.54%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000022610 RRM 3 81
ENSBTAP00000022610 RRM 111 193
ENSBTAP00000022610 RRM 329 418
ENSBTAP00000022610 RRM 482 595
ENSBTAP00000055012 RRM 3 45
ENSBTAP00000055012 RRM 183 272
ENSBTAP00000055012 RRM 336 449

RNA contacting residues

Links

Other RRM family RBPs
Other Bos taurus RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSP00000223073-D1 Bos grunniens ENSP00000223073-D1 I 0.997
ENSOARG00000002547 Ovis aries ENSOARG00000002547 I 0.981
RBM28 Callithrix jacchus ENSCJAG00000017731 I 0.935
RBM28 Tursiops truncatus ENSTTRG00000013647 I 0.902
RBM28 Dasypus novemcinctus ENSDNOG00000001124 I 0.894
RBM28 Equus caballus ENSECAG00000007745 I 0.889
ENSSTOG00000002169 Ictidomys tridecemlineatus ENSSTOG00000002169 I 0.883
RBM28 Myotis lucifugus ENSMLUG00000002186 I 0.880
ENSMPUG00000006511 Mustela putorius furo ENSMPUG00000006511 I 0.880
RBM28 Homo sapiens ENSG00000106344 D 0.875
ENSPPYG00000017975 Pongo abelii ENSPPYG00000017975 I 0.875
RBM28 Pan troglodytes ENSPTRG00000019659 I 0.875
RBM28 Oryctolagus cuniculus ENSOCUG00000003009 I 0.874
RBM28 Canis familiaris ENSCAFG00000001667 I 0.872
ENSAMEG00000004776 Ailuropoda melanoleuca ENSAMEG00000004776 I 0.872
ENSCSAG00000010161 Chlorocebus sabaeus ENSCSAG00000010161 I 0.870
ENSNLEG00000012307 Nomascus leucogenys ENSNLEG00000012307 I 0.869
RBM28 Felis catus ENSFCAG00000000946 I 0.867
RBM28 Loxodonta africana ENSLAFG00000010717 I 0.867
ENSPANG00000022295 Papio anubis ENSPANG00000022295 I 0.864
Rbm28 Mus musculus ENSMUSG00000029701 I 0.864
RBM28 Cavia porcellus ENSCPOG00000006253 I 0.861
Rbm28 Rattus norvegicus ENSRNOG00000005468 I 0.856
ENSP00000223073 Macaca fascicularis ENSP00000223073 I 0.854
Myotis_brandtii_RBM28_10012817 Myotis brandtii Myotis_brandtii_RBM28_10012817 I 0.839
RBM28 Otolemur garnettii ENSOGAG00000006011 I 0.835
RBM28 Monodelphis domestica ENSMODG00000015151 I 0.834
RBM28 Echinops telfairi ENSETEG00000007130 I 0.815
RBM28 Microcebus murinus ENSMICG00000000107 I 0.812
ENSTSYG00000002892 Tarsius syrichta ENSTSYG00000002892 I 0.807
RBM28 Sorex araneus ENSSARG00000008303 I 0.801
RBM28 Gorilla gorilla ENSGGOG00000004644 I 0.741
ENSSHAG00000017017 Sarcophilus harrisii ENSSHAG00000017017 I 0.730
ENSMEUG00000009611 Macropus eugenii ENSMEUG00000009611 I 0.723