RBM28 (Sorex araneus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSSARG00000008303 T087163_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
RBM28
M25386_2.00		 Sorex araneus NGWGUAGW JPLE
Sasse et al.(2025)
RM_Sor.ara_ENSSARG00000008303 		0.010

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM28
M00630_2.00 		Homo sapiens GUGGGUCUCGK HTR-SELEX
Jolma et al.(2020)
0.815
RBM28
M00629_2.00 		Homo sapiens KRGGYYGWGCGGUGG HTR-SELEX
Jolma et al.(2020)
0.815
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
0.815
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.010
(89.04%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSARP00000007554 RRM 3 82
ENSSARP00000007554 RRM 111 184
ENSSARP00000007554 RRM 332 421
ENSSARP00000007554 RRM 485 575

RNA contacting residues

Links

Other RRM family RBPs
Other Sorex araneus RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM28 Homo sapiens ENSG00000106344 D 0.863
ENSPPYG00000017975 Pongo abelii ENSPPYG00000017975 I 0.863
RBM28 Pan troglodytes ENSPTRG00000019659 I 0.863
ENSNLEG00000012307 Nomascus leucogenys ENSNLEG00000012307 I 0.860
RBM28 Oryctolagus cuniculus ENSOCUG00000003009 I 0.858
RBM28 Tursiops truncatus ENSTTRG00000013647 I 0.856
RBM28 Myotis lucifugus ENSMLUG00000002186 I 0.852
ENSMPUG00000006511 Mustela putorius furo ENSMPUG00000006511 I 0.852
ENSCSAG00000010161 Chlorocebus sabaeus ENSCSAG00000010161 I 0.849
RBM28 Felis catus ENSFCAG00000000946 I 0.849
RBM28 Equus caballus ENSECAG00000007745 I 0.848
ENSAMEG00000004776 Ailuropoda melanoleuca ENSAMEG00000004776 I 0.846
RBM28 Cavia porcellus ENSCPOG00000006253 I 0.846
ENSPANG00000022295 Papio anubis ENSPANG00000022295 I 0.844
RBM28 Canis familiaris ENSCAFG00000001667 I 0.843
RBM28 Loxodonta africana ENSLAFG00000010717 I 0.843
RBM28 Dasypus novemcinctus ENSDNOG00000001124 I 0.839
Rbm28 Mus musculus ENSMUSG00000029701 I 0.836
ENSSTOG00000002169 Ictidomys tridecemlineatus ENSSTOG00000002169 I 0.836
Rbm28 Rattus norvegicus ENSRNOG00000005468 I 0.821
ENSP00000223073 Macaca fascicularis ENSP00000223073 I 0.818
Myotis_brandtii_RBM28_10012817 Myotis brandtii Myotis_brandtii_RBM28_10012817 I 0.814
ENSOARG00000002547 Ovis aries ENSOARG00000002547 I 0.809
RBM28 Callithrix jacchus ENSCJAG00000017731 I 0.804
RBM28 Monodelphis domestica ENSMODG00000015151 I 0.801
RBM28 Bos taurus ENSBTAG00000017001 I 0.801
ENSP00000223073-D1 Bos grunniens ENSP00000223073-D1 I 0.798
RBM28 Echinops telfairi ENSETEG00000007130 I 0.791
RBM28 Microcebus murinus ENSMICG00000000107 I 0.788
RBM28 Gorilla gorilla ENSGGOG00000004644 I 0.755