mkrn1 (Danio rerio)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSDARG00000041665 T02454_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000061069 CCCH ZF 20 45
ENSDARP00000061069 CCCH ZF 49 74
ENSDARP00000061069 CCCH ZF 165 190
ENSDARP00000061069 CCCH ZF 321 348

Links

Other CCCH ZF family RBPs
Other Danio rerio RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30054.m000804 Ricinus communis 30054.m000804 N 0.000
AT1G32360 Arabidopsis thaliana AT1G32360-TAIR-G N 0.000
BGIOSIBCE026569 Oryza indica BGIOSIBCE026569 N 0.000
BRADI3G16360 Brachypodium distachyon BRADI3G16360 N 0.000
BRADI3G16377 Brachypodium distachyon BRADI3G16377 N 0.000
cassava25690.m1 Manihot esculenta cassava25690.m1 N 0.000
cassava5467.m1 Manihot esculenta cassava5467.m1 N 0.000
chr4.LjT10E08.110.nc Lotus japonicus chr4.LjT10E08.110.nc N 0.000
Cucsa.312990 Cucumis sativus Cucsa.312990 N 0.000
Glyma01g10610.1 Glycine max Glyma01g10610.1 N 0.000
GSVIVG00013136001 Vitis vinifera GSVIVG00013136001 N 0.000
gw1.11.272.1 Selaginella moellendorfii gw1.11.272.1 N 0.000
LOC_Os08g06330 Oryza sativa LOC_Os08g06330 N 0.000
MDP0000209929 Malus x domestica MDP0000209929 N 0.000
MDP0000706016 Malus x domestica MDP0000706016 N 0.000
Medtr8g078060 Medicago truncatula Medtr8g078060 N 0.000
mgf003951m Mimulus guttatus mgf003951m N 0.000
mgf004101m Mimulus guttatus mgf004101m N 0.000
mgf012162m Mimulus guttatus mgf012162m N 0.000
PK04103.1 Cannabis sativa PK04103.1 N 0.000
B9MU37_POPTR Populus trichocarpa POPTR_0001s02330 N 0.000
B9GZ92_POPTR Populus trichocarpa POPTR_0003s09240 N 0.000
ppa008182m Prunus persica ppa008182m N 0.000
XM_002890939.1 Arabidopsis lyrata scaffold_103602.1 N 0.000