mkrn1 (Danio rerio)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSDARG00000041665 T02454_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000061069 CCCH ZF 20 45
ENSDARP00000061069 CCCH ZF 49 74
ENSDARP00000061069 CCCH ZF 165 190
ENSDARP00000061069 CCCH ZF 321 348

Links

Other CCCH ZF family RBPs
Other Danio rerio RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH74368 Xenopus laevis AAH74368 N 0.755
Ame_R001963 Ailuropoda melanoleuca Ame_R001963 N 0.726
MKRN1 Anolis carolinensis ENSACAG00000010934 N 0.792
ENSCAFG00000003953 Canis familiaris ENSCAFG00000003953 N 0.717
MKRN1 Choloepus hoffmanni ENSCHOG00000011015 N 0.774
ENSCPOG00000000948 Cavia porcellus ENSCPOG00000000948 N 0.736
LOC100065893 Equus caballus ENSECAG00000017929 N 0.726
MKRN1 Felis catus ENSFCAG00000013043 N 0.717
MKRN1 Homo sapiens ENSG00000133606 N 0.774
MKRN1 Gasterosteus aculeatus ENSGACG00000019227 N 0.858
Q9PTI4_CHICK Gallus gallus ENSGALG00000012852 N 0.783
ENSGGOG00000023977 Gorilla gorilla ENSGGOG00000023977 N 0.774
MKRN1 Loxodonta africana ENSLAFG00000018408 N 0.764
MKRN1_MACEU Macropus eugenii ENSMEUG00000007399 N 0.802
MKRN1 Meleagris gallopavo ENSMGAG00000013208 N 0.726
MKRN1 Microcebus murinus ENSMICG00000002114 N 0.764
MKRN1 Macaca mulatta ENSMMUG00000010420 N 0.726
ENSMODG00000013686 Monodelphis domestica ENSMODG00000013686 N 0.802
Mkrn1 Mus musculus ENSMUSG00000029922 N 0.774
ENSOCUG00000010180 Oryctolagus cuniculus ENSOCUG00000010180 N 0.717
MKRN1 Ochotona princeps ENSOPRG00000010353 N 0.755
MKRN1 Oryzias latipes ENSORLG00000012765 N 0.849
MKRN1 Procavia capensis ENSPCAG00000014683 N 0.717
ENSPPYG00000018057 Pongo pygmaeus ENSPPYG00000018057 N 0.717
ENSPPYG00000020255 Pongo pygmaeus ENSPPYG00000020255 N 0.726
XR_024878.1 Pan troglodytes ENSPTRG00000019766 N 0.764
Q68FR1_RAT Rattus norvegicus ENSRNOG00000009280 N 0.764
MKRN1 Sus scrofa ENSSSCG00000016498 N 0.774
MKRN1 Taeniopygia guttata ENSTGUG00000011669 N 0.708
MKRN1 Tetraodon nigroviridis ENSTNIG00000007231 N 0.840
NP_001072050.1 Takifugu rubripes ENSTRUG00000012057 N 0.840
MKRN1 Tursiops truncatus ENSTTRG00000009528 N 0.774
Q6GLT5 Xenopus laevis Q6GLT5 N 0.755