LOC_Os05g17350 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os05g17350 T11413_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os05g17350.1 CCHC ZF 191 208
LOC_Os05g17350.1 CCHC ZF 227 243
LOC_Os05g17350.1 CCHC ZF 299 316

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

7 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29726.m004014 Ricinus communis 29726.m004014 N 0.000
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.000
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.000
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.000
cassava25492.m1 Manihot esculenta cassava25492.m1 N 0.000
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.000
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.000
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.000
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.000
LjSGA_008412.1 Lotus japonicus LjSGA_008412.1 N 0.000
LjSGA_017774.1 Lotus japonicus LjSGA_017774.1 N 0.000
LjSGA_036568.1 Lotus japonicus LjSGA_036568.1 N 0.000
LjSGA_129379.1 Lotus japonicus LjSGA_129379.1 N 0.000
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.000
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.000
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.000
mgf002685m Mimulus guttatus mgf002685m N 0.000
PDK_20s1443411g001 Phoenix dactylifera PDK_20s1443411g001 N 0.000
PDK_20s1508231g002 Phoenix dactylifera PDK_20s1508231g002 N 0.000
ppa005056m Prunus persica ppa005056m N 0.000
SB03G009920 Sorghum bicolor Sb03g009920 N 0.000
SB03G009930 Sorghum bicolor Sb03g009930 N 0.000