CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Khdrbs2
(
Dipodomys ordii
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSDORG00000005701
T18674_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHDRBS2
M176_0.6
Homo sapiens
RAUAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00185
0.988
KHDRBS3
M033_0.6
Homo sapiens
AUAAAV
RNAcompete
Ray et al.(2013)
RNCMPT00034
0.845
KHDRBS1
M160_0.6
Homo sapiens
AUAAAAV
RNAcompete
Ray et al.(2013)
RNCMPT00169
0.765
Khdrbs1
M060_0.6
Mus musculus
UAAAAVV
RNAcompete
Ray et al.(2013)
RNCMPT00062
0.765
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000005334
KH
30
109
SERVLIPVKQYPKFNFVGKLLGPRGSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPP
Links
Other
KH
family RBPs
Other
Dipodomys ordii
RBPs
112 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RS2Z33
Arabidopsis thaliana
AT2G37340-TAIR-G
N
0.000
At-RS2Z
Arabidopsis thaliana
AT3G53500-TAIR-G
N
0.000
GRMZM2G083975
Zea mays
GRMZM2G083975
N
0.000
GSVIVG00025580001
Vitis vinifera
GSVIVG00025580001
N
0.000
LOC_Os01g06290
Oryza sativa
LOC_Os01g06290
N
0.000
mgf016290m
Mimulus guttatus
mgf016290m
N
0.000
A9PGS4_POPTR
Populus trichocarpa
POPTR_0006s23170
N
0.000
ppa009074m
Prunus persica
ppa009074m
N
0.000
ppa009294m
Prunus persica
ppa009294m
N
0.000
ppa009671m
Prunus persica
ppa009671m
N
0.000