fmr1 (Xenopus tropicalis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSXETG00000019647 T19772_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
FXR1
M152_0.6 		Homo sapiens AYGACR RNAcompete
Ray et al.(2013)
RNCMPT00161 		0.777
FXR2
M020_0.6 		Homo sapiens DGACRRR RNAcompete
Ray et al.(2013)
RNCMPT00020 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000042153 KH 220 279
ENSXETP00000042153 KH 283 351
ENSXETP00000042520 KH 220 279
ENSXETP00000042520 KH 283 351

Links

Other KH family RBPs
Other Xenopus tropicalis RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30055.m001569 Ricinus communis 30055.m001569 N 0.000
cassava19191.valid.m1 Manihot esculenta cassava19191.valid.m1 N 0.000
cassava19192.valid.m1 Manihot esculenta cassava19192.valid.m1 N 0.000
cassava21692.m1 Manihot esculenta cassava21692.m1 N 0.000
cassava21693.m1 Manihot esculenta cassava21693.m1 N 0.000
cassava29630.valid.m1 Manihot esculenta cassava29630.valid.m1 N 0.000
Cucsa.185730 Cucumis sativus Cucsa.185730 N 0.000
Glyma03g35450.1 Glycine max Glyma03g35450.1 N 0.000
Glyma11g18940.1 Glycine max Glyma11g18940.1 N 0.000
GSVIVG00036119001 Vitis vinifera GSVIVG00036119001 N 0.000
MDP0000181657 Malus x domestica MDP0000181657 N 0.000
MDP0000250854 Malus x domestica MDP0000250854 N 0.000
MDP0000851531 Malus x domestica MDP0000851531 N 0.000
Medtr7g009690 Medicago truncatula Medtr7g009690 N 0.000
mgf001576m Mimulus guttatus mgf001576m N 0.000
PDK_20s1316982g002 Phoenix dactylifera PDK_20s1316982g002 N 0.000
PK05405.1 Cannabis sativa PK05405.1 N 0.000
B9MYW2_POPTR Populus trichocarpa POPTR_0004s21210 N 0.000
B9HC85_POPTR Populus trichocarpa POPTR_0006s22890 N 0.000
B9HQ12_POPTR Populus trichocarpa POPTR_0009s16490 N 0.000
B9IIU5_POPTR Populus trichocarpa POPTR_0016s08010 N 0.000
ppa004677m Prunus persica ppa004677m N 0.000
ppa004785m Prunus persica ppa004785m N 0.000