B9HC85_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0006s22890 T45534_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s22890.1 RRM 108 178
POPTR_0006s22890.1 RRM 188 257
POPTR_0006s22890.1 RRM 282 352

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

26 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9IIU5_POPTR Populus trichocarpa POPTR_0016s08010 N 0.944
cassava21693.m1 Manihot esculenta cassava21693.m1 N 0.863
cassava19191.valid.m1 Manihot esculenta cassava19191.valid.m1 N 0.863
cassava21692.m1 Manihot esculenta cassava21692.m1 N 0.863
cassava29630.valid.m1 Manihot esculenta cassava29630.valid.m1 N 0.850
cassava19192.valid.m1 Manihot esculenta cassava19192.valid.m1 N 0.849
ppa004785m Prunus persica ppa004785m N 0.845
MDP0000181657 Malus x domestica MDP0000181657 N 0.836
MDP0000851531 Malus x domestica MDP0000851531 N 0.836
28629.m000549 Ricinus communis 28629.m000549 N 0.826
PK04414.1 Cannabis sativa PK04414.1 N 0.817
mgf001576m Mimulus guttatus mgf001576m N 0.812
GSVIVG00036119001 Vitis vinifera GSVIVG00036119001 N 0.790
Glyma03g35450.1 Glycine max Glyma03g35450.1 N 0.779
GSVIVG00033857001 Vitis vinifera GSVIVG00033857001 N 0.766
PK05405.1 Cannabis sativa PK05405.1 N 0.765
PDK_20s1316982g002 Phoenix dactylifera PDK_20s1316982g002 N 0.764
Cucsa.185730 Cucumis sativus Cucsa.185730 N 0.741
Medtr7g127590 Medicago truncatula Medtr7g127590 N 0.737
chr1.CM0010.50.nc Lotus japonicus chr1.CM0010.50.nc N 0.737
ppa004677m Prunus persica ppa004677m N 0.728
Glyma11g18940.1 Glycine max Glyma11g18940.1 N 0.722
Glyma12g09530.1 Glycine max Glyma12g09530.1 N 0.717
30055.m001569 Ricinus communis 30055.m001569 N 0.708
XM_002876116.1 Arabidopsis lyrata fgenesh2_kg.5__1629__AT3G52660.1 N 0.706
AT3G52660 Arabidopsis thaliana AT3G52660-TAIR-G N 0.706