PK05405.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK05405.1 T31643_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK05405.1 RRM 118 188
PK05405.1 RRM 198 268
PK05405.1 RRM 292 362

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00036119001 Vitis vinifera GSVIVG00036119001 N 0.879
Cucsa.185730 Cucumis sativus Cucsa.185730 N 0.864
ppa004677m Prunus persica ppa004677m N 0.845
30055.m001569 Ricinus communis 30055.m001569 N 0.826
Glyma11g18940.1 Glycine max Glyma11g18940.1 N 0.826
Glyma12g09530.1 Glycine max Glyma12g09530.1 N 0.826
MDP0000250854 Malus x domestica MDP0000250854 N 0.817
MDP0000851531 Malus x domestica MDP0000851531 N 0.793
MDP0000181657 Malus x domestica MDP0000181657 N 0.793
cassava29630.valid.m1 Manihot esculenta cassava29630.valid.m1 N 0.789
Medtr7g009690 Medicago truncatula Medtr7g009690 N 0.789
B9IIU5_POPTR Populus trichocarpa POPTR_0016s08010 N 0.779
mgf001576m Mimulus guttatus mgf001576m N 0.775
B9HQ12_POPTR Populus trichocarpa POPTR_0009s16490 N 0.775
ppa004785m Prunus persica ppa004785m N 0.775
B9HC85_POPTR Populus trichocarpa POPTR_0006s22890 N 0.765
cassava21693.m1 Manihot esculenta cassava21693.m1 N 0.761
cassava21692.m1 Manihot esculenta cassava21692.m1 N 0.761
cassava19191.valid.m1 Manihot esculenta cassava19191.valid.m1 N 0.761
cassava19192.valid.m1 Manihot esculenta cassava19192.valid.m1 N 0.756
B9MYW2_POPTR Populus trichocarpa POPTR_0004s21210 N 0.756
PK04414.1 Cannabis sativa PK04414.1 N 0.751
Glyma03g35450.1 Glycine max Glyma03g35450.1 N 0.746
28629.m000549 Ricinus communis 28629.m000549 N 0.746
GSVIVG00033857001 Vitis vinifera GSVIVG00033857001 N 0.724
PDK_20s1316982g002 Phoenix dactylifera PDK_20s1316982g002 N 0.723
chr1.CM0010.50.nc Lotus japonicus chr1.CM0010.50.nc N 0.709
Medtr7g127590 Medicago truncatula Medtr7g127590 N 0.704