cassava29630.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava29630.valid.m1 T49267_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava29630.valid.m1 RRM 113 183
cassava29630.valid.m1 RRM 193 263
cassava29630.valid.m1 RRM 287 357

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava21692.m1 Manihot esculenta cassava21692.m1 N 0.930
cassava19191.valid.m1 Manihot esculenta cassava19191.valid.m1 N 0.930
cassava21693.m1 Manihot esculenta cassava21693.m1 N 0.930
cassava19192.valid.m1 Manihot esculenta cassava19192.valid.m1 N 0.915
MDP0000181657 Malus x domestica MDP0000181657 N 0.869
MDP0000851531 Malus x domestica MDP0000851531 N 0.864
28629.m000549 Ricinus communis 28629.m000549 N 0.864
B9IIU5_POPTR Populus trichocarpa POPTR_0016s08010 N 0.864
ppa004785m Prunus persica ppa004785m N 0.859
B9HC85_POPTR Populus trichocarpa POPTR_0006s22890 N 0.850
PK04414.1 Cannabis sativa PK04414.1 N 0.826
GSVIVG00036119001 Vitis vinifera GSVIVG00036119001 N 0.818
mgf001576m Mimulus guttatus mgf001576m N 0.812
GSVIVG00033857001 Vitis vinifera GSVIVG00033857001 N 0.804
Glyma03g35450.1 Glycine max Glyma03g35450.1 N 0.793
PK05405.1 Cannabis sativa PK05405.1 N 0.789
PDK_20s1316982g002 Phoenix dactylifera PDK_20s1316982g002 N 0.770
ppa004677m Prunus persica ppa004677m N 0.765
Cucsa.185730 Cucumis sativus Cucsa.185730 N 0.765
chr1.CM0010.50.nc Lotus japonicus chr1.CM0010.50.nc N 0.751
Medtr7g127590 Medicago truncatula Medtr7g127590 N 0.746
30055.m001569 Ricinus communis 30055.m001569 N 0.723
MDP0000250854 Malus x domestica MDP0000250854 N 0.723
Glyma11g18940.1 Glycine max Glyma11g18940.1 N 0.718
Glyma12g09530.1 Glycine max Glyma12g09530.1 N 0.718
AT3G52660 Arabidopsis thaliana AT3G52660-TAIR-G N 0.707
XM_002876116.1 Arabidopsis lyrata fgenesh2_kg.5__1629__AT3G52660.1 N 0.702