ppa004677m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa004677m T58345_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa004677m RRM 118 188
ppa004677m RRM 198 268
ppa004677m RRM 292 362

Links

Other RRM family RBPs
Other Prunus persica RBPs

26 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000250854 Malus x domestica MDP0000250854 N 0.915
GSVIVG00036119001 Vitis vinifera GSVIVG00036119001 N 0.850
PK05405.1 Cannabis sativa PK05405.1 N 0.845
Cucsa.185730 Cucumis sativus Cucsa.185730 N 0.808
Glyma12g09530.1 Glycine max Glyma12g09530.1 N 0.808
Glyma11g18940.1 Glycine max Glyma11g18940.1 N 0.803
30055.m001569 Ricinus communis 30055.m001569 N 0.798
MDP0000181657 Malus x domestica MDP0000181657 N 0.775
MDP0000851531 Malus x domestica MDP0000851531 N 0.775
ppa004785m Prunus persica ppa004785m N 0.765
cassava29630.valid.m1 Manihot esculenta cassava29630.valid.m1 N 0.765
Glyma03g35450.1 Glycine max Glyma03g35450.1 N 0.761
B9HQ12_POPTR Populus trichocarpa POPTR_0009s16490 N 0.751
B9MYW2_POPTR Populus trichocarpa POPTR_0004s21210 N 0.746
cassava19191.valid.m1 Manihot esculenta cassava19191.valid.m1 N 0.737
cassava21692.m1 Manihot esculenta cassava21692.m1 N 0.737
cassava21693.m1 Manihot esculenta cassava21693.m1 N 0.737
Medtr7g009690 Medicago truncatula Medtr7g009690 N 0.732
cassava19192.valid.m1 Manihot esculenta cassava19192.valid.m1 N 0.732
B9IIU5_POPTR Populus trichocarpa POPTR_0016s08010 N 0.732
B9HC85_POPTR Populus trichocarpa POPTR_0006s22890 N 0.728
PK04414.1 Cannabis sativa PK04414.1 N 0.723
mgf001576m Mimulus guttatus mgf001576m N 0.723
28629.m000549 Ricinus communis 28629.m000549 N 0.714
chr1.CM0010.50.nc Lotus japonicus chr1.CM0010.50.nc N 0.709
GSVIVG00033857001 Vitis vinifera GSVIVG00033857001 N 0.706