B9IIU5_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0016s08010 T45678_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s08010.1 RRM 108 178
POPTR_0016s08010.1 RRM 188 258
POPTR_0016s08010.1 RRM 286 356

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

26 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HC85_POPTR Populus trichocarpa POPTR_0006s22890 N 0.944
cassava29630.valid.m1 Manihot esculenta cassava29630.valid.m1 N 0.864
cassava21692.m1 Manihot esculenta cassava21692.m1 N 0.854
cassava21693.m1 Manihot esculenta cassava21693.m1 N 0.854
cassava19191.valid.m1 Manihot esculenta cassava19191.valid.m1 N 0.854
MDP0000851531 Malus x domestica MDP0000851531 N 0.845
ppa004785m Prunus persica ppa004785m N 0.845
cassava19192.valid.m1 Manihot esculenta cassava19192.valid.m1 N 0.840
28629.m000549 Ricinus communis 28629.m000549 N 0.840
MDP0000181657 Malus x domestica MDP0000181657 N 0.840
PK04414.1 Cannabis sativa PK04414.1 N 0.831
mgf001576m Mimulus guttatus mgf001576m N 0.826
GSVIVG00036119001 Vitis vinifera GSVIVG00036119001 N 0.799
GSVIVG00033857001 Vitis vinifera GSVIVG00033857001 N 0.785
Glyma03g35450.1 Glycine max Glyma03g35450.1 N 0.784
PK05405.1 Cannabis sativa PK05405.1 N 0.779
PDK_20s1316982g002 Phoenix dactylifera PDK_20s1316982g002 N 0.770
Cucsa.185730 Cucumis sativus Cucsa.185730 N 0.751
chr1.CM0010.50.nc Lotus japonicus chr1.CM0010.50.nc N 0.751
Medtr7g127590 Medicago truncatula Medtr7g127590 N 0.742
ppa004677m Prunus persica ppa004677m N 0.732
XM_002876116.1 Arabidopsis lyrata fgenesh2_kg.5__1629__AT3G52660.1 N 0.726
AT3G52660 Arabidopsis thaliana AT3G52660-TAIR-G N 0.726
Glyma11g18940.1 Glycine max Glyma11g18940.1 N 0.718
Glyma12g09530.1 Glycine max Glyma12g09530.1 N 0.714
30055.m001569 Ricinus communis 30055.m001569 N 0.709