ppa004785m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa004785m T58346_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa004785m RRM 119 189
ppa004785m RRM 199 269
ppa004785m RRM 293 363

Links

Other RRM family RBPs
Other Prunus persica RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000181657 Malus x domestica MDP0000181657 N 0.962
MDP0000851531 Malus x domestica MDP0000851531 N 0.962
cassava21692.m1 Manihot esculenta cassava21692.m1 N 0.887
cassava19191.valid.m1 Manihot esculenta cassava19191.valid.m1 N 0.887
cassava21693.m1 Manihot esculenta cassava21693.m1 N 0.887
PK04414.1 Cannabis sativa PK04414.1 N 0.878
cassava19192.valid.m1 Manihot esculenta cassava19192.valid.m1 N 0.873
cassava29630.valid.m1 Manihot esculenta cassava29630.valid.m1 N 0.859
B9HC85_POPTR Populus trichocarpa POPTR_0006s22890 N 0.845
B9IIU5_POPTR Populus trichocarpa POPTR_0016s08010 N 0.845
Glyma03g35450.1 Glycine max Glyma03g35450.1 N 0.826
GSVIVG00036119001 Vitis vinifera GSVIVG00036119001 N 0.822
28629.m000549 Ricinus communis 28629.m000549 N 0.822
mgf001576m Mimulus guttatus mgf001576m N 0.817
GSVIVG00033857001 Vitis vinifera GSVIVG00033857001 N 0.799
PDK_20s1316982g002 Phoenix dactylifera PDK_20s1316982g002 N 0.784
Cucsa.185730 Cucumis sativus Cucsa.185730 N 0.779
PK05405.1 Cannabis sativa PK05405.1 N 0.775
chr1.CM0010.50.nc Lotus japonicus chr1.CM0010.50.nc N 0.775
Medtr7g127590 Medicago truncatula Medtr7g127590 N 0.775
ppa004677m Prunus persica ppa004677m N 0.765
MDP0000131956 Malus x domestica MDP0000131956 N 0.756
Glyma12g09530.1 Glycine max Glyma12g09530.1 N 0.756
Glyma11g18940.1 Glycine max Glyma11g18940.1 N 0.756
30055.m001569 Ricinus communis 30055.m001569 N 0.737
XM_002876116.1 Arabidopsis lyrata fgenesh2_kg.5__1629__AT3G52660.1 N 0.730
MDP0000250854 Malus x domestica MDP0000250854 N 0.728
AT3G52660 Arabidopsis thaliana AT3G52660-TAIR-G N 0.726
Medtr7g009690 Medicago truncatula Medtr7g009690 N 0.709
B9HQ12_POPTR Populus trichocarpa POPTR_0009s16490 N 0.709