CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TERG_02769
(
Trichophyton rubrum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
TERG_02769
T31090_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CADANIAG00004740
M241_0.6
Aspergillus nidulans
UACUAMK
RNAcompete
Ray et al.(2013)
RNCMPT00287
0.944
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TERG_02769T0
RRM
277
347
LFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGDDYFKAAREMQGKYIGSHPVL
Links
Other
RRM
family RBPs
Other
Trichophyton rubrum
RBPs
50 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A7TJ31_VANPO
Vanderwaltozyma polyspora
A7TJ31_VANPO
N
0.000
AFL070C
Ashbya gossypii
AFL070C
N
0.000
CAGL0H03267g
Candida glabrata
CAGL0H03267g
N
0.000
Kwal_23945
Kluyveromyces waltii
Kwal_23945
N
0.000
SAKL0A05016g
Lachancea kluyveri
SAKL0A05016g
N
0.000