HNRNPR (Ochotona princeps)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOPRG00000014561 T40041_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.838
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.799
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.750
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000013286 RRM 167 229
ENSOPRP00000013286 RRM 247 318
ENSOPRP00000013286 RRM 346 395

Links

Other RRM family RBPs
Other Ochotona princeps RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH70529 Xenopus laevis AAH70529 I 0.741
AAI61702 Xenopus laevis AAI61702 I 0.794
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.853
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.756
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.746
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.853
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.756
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.853
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.764
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.873
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.863
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.863
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.765
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.756
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.853
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.756
syncripl Danio rerio ENSDARG00000026723 I 0.733
syncrip Danio rerio ENSDARG00000040184 I 0.746
HNRNPR Equus caballus ENSECAG00000013733 I 0.853
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.828
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.756
HNRNPR Homo sapiens ENSG00000125944 I 0.873
SYNCRIP Homo sapiens ENSG00000135316 I 0.756
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.746
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.743
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.746
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.838
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.751
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.756
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.873
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.853
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.756
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.764
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.838
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.751
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.756
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.756
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.828
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.853
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.756
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.756
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.858
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.756
Syncrip Mus musculus ENSMUSG00000032423 I 0.761
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.853
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.843
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.746
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.756
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.873
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.863
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.746
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.741
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.738
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.769
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.853
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.756
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.863
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.756
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.756
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.863
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.761
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.853
HNRNPR Sorex araneus ENSSARG00000001732 I 0.863
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.756
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.756
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.863
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.838
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.733
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.733
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.737
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.733
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.737
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.738
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.756
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.937
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.756
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.799
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.741