HNRNPR (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000002515 T40095_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.862
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.852
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.803
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000003123 RRM 169 237
ENSORLP00000003123 RRM 250 320
ENSORLP00000003123 RRM 348 410

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.951
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.936
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.936
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.854
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.849
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.849
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.849
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.849
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.844
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.844
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.844
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.844
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.844
HNRNPR Homo sapiens ENSG00000125944 I 0.844
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.843
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.839
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.839
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.839
HNRNPR Equus caballus ENSECAG00000013733 I 0.839
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.839
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.839
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.839
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.839
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.839
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.839
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.839
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.839
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.839
HNRNPR Sorex araneus ENSSARG00000001732 I 0.839
AAI61702 Xenopus laevis AAI61702 I 0.838
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.824
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.823
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.820
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.819
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.818
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.813
SYNCRIP Homo sapiens ENSG00000135316 I 0.813
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.813
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.813
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.813
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.813
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.813
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.813
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.813
Syncrip Mus musculus ENSMUSG00000032423 I 0.813
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.813
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.813
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.813
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.813
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.813
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.813
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.813
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.813
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.813
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.813
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.813
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.813
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.813
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.813
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.810
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.808
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.808
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.805
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.803
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.803
syncrip Danio rerio ENSDARG00000040184 I 0.803
syncripl Danio rerio ENSDARG00000026723 I 0.800
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.795
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.795
AAH70529 Xenopus laevis AAH70529 I 0.793
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.793
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.790
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.785
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.780
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.757
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.746
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.725
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.716