TIA1 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000013470 T42113_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TIA1
M156_0.6 		Homo sapiens WUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00165 		0.907
TIA1
M075_0.6 		Homo sapiens UUUUUBK RNAcompete
Ray et al.(2013)
RNCMPT00077 		0.907
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000016465 RRM 9 77
ENSTNIP00000016465 RRM 108 178
ENSTNIP00000016465 RRM 216 280

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH77169 Xenopus laevis AAH77169 I 0.873
AAH80105 Xenopus laevis AAH80105 I 0.878
Ame_R002705 Ailuropoda melanoleuca Ame_R002705 I 0.907
CAC95018 Xenopus laevis CAC95018 I 0.873
ENSACAG00000009648 Anolis carolinensis ENSACAG00000009648 I 0.912
TIAL1 Anolis carolinensis ENSACAG00000016986 I 0.829
A1A4R7_BOVIN Bos taurus ENSBTAG00000004080 I 0.844
Q0VBZ6_BOVIN Bos taurus ENSBTAG00000019182 I 0.912
TIA1 Canis familiaris ENSCAFG00000003341 I 0.907
TIAL1 Canis familiaris ENSCAFG00000012171 I 0.779
TIA1 Callithrix jacchus ENSCJAG00000019278 I 0.907
TIAL1 Callithrix jacchus ENSCJAG00000019682 I 0.779
TIA1 Cavia porcellus ENSCPOG00000008327 I 0.907
tial1 Danio rerio ENSDARG00000009525 I 0.839
tia1l Danio rerio ENSDARG00000026476 I 0.829
tia1 Danio rerio ENSDARG00000052536 I 0.902
TIA1 Dasypus novemcinctus ENSDNOG00000016356 I 0.907
Tia1 Dipodomys ordii ENSDORG00000008601 I 0.849
Tial1 Dipodomys ordii ENSDORG00000010683 I 0.743
TIAL1 Equus caballus ENSECAG00000009970 I 0.844
TIA1 Echinops telfairi ENSETEG00000010021 I 0.907
TIA1 Homo sapiens ENSG00000116001 D 0.907
TIAL1 Homo sapiens ENSG00000151923 D 0.844
TIAL1 Gasterosteus aculeatus ENSGACG00000003365 I 0.801
TIA1 Gasterosteus aculeatus ENSGACG00000013294 I 0.844
TIA1 Gasterosteus aculeatus ENSGACG00000015800 I 0.980
Q800W1_CHICK Gallus gallus ENSGALG00000009427 I 0.779
Q800W4_CHICK Gallus gallus ENSGALG00000013879 I 0.907
TIA1 Loxodonta africana ENSLAFG00000003463 I 0.912
TIA1 Meleagris gallopavo ENSMGAG00000003493 I 0.902
TIA1 Macaca mulatta ENSMMUG00000001126 I 0.907
TIAL1 Macaca mulatta ENSMMUG00000001472 I 0.844
TIAL1 Monodelphis domestica ENSMODG00000008865 I 0.779
TIA1 Monodelphis domestica ENSMODG00000011515 I 0.912
Tial1 Mus musculus ENSMUSG00000030846 I 0.844
Tia1 Mus musculus ENSMUSG00000071337 I 0.902
TIAL1 Ornithorhynchus anatinus ENSOANG00000004896 I 0.717
TIAL1 Oryctolagus cuniculus ENSOCUG00000003783 I 0.839
TIA1 Oryctolagus cuniculus ENSOCUG00000011204 I 0.907
TIA1 Otolemur garnettii ENSOGAG00000010572 I 0.907
TIA1 Oryzias latipes ENSORLG00000002529 I 0.980
TIAL1 Oryzias latipes ENSORLG00000013798 I 0.780
TIA1 Oryzias latipes ENSORLG00000015642 I 0.873
TIAL1 Procavia capensis ENSPCAG00000003192 I 0.775
ENSPPYG00000002703 Pongo pygmaeus ENSPPYG00000002703 I 0.779
ENSPPYG00000012326 Pongo pygmaeus ENSPPYG00000012326 I 0.893
TIAL1 Pan troglodytes ENSPTRG00000002996 I 0.779
TIA1 Pan troglodytes ENSPTRG00000023495 I 0.907
TIA1 Pteropus vampyrus ENSPVAG00000004846 I 0.907
TIAL1 Pteropus vampyrus ENSPVAG00000017585 I 0.775
Tia1 Rattus norvegicus ENSRNOG00000016813 I 0.898
Tial1 Rattus norvegicus ENSRNOG00000020271 I 0.779
TIA1 Sorex araneus ENSSARG00000001997 I 0.771
ENSSSCG00000010685 Sus scrofa ENSSSCG00000010685 I 0.844
ENSTBEG00000017228 Tupaia belangeri ENSTBEG00000017228 I 0.805
TIA1 Taeniopygia guttata ENSTGUG00000017307 I 0.859
TIA1 Tetraodon nigroviridis ENSTNIG00000011433 I 0.907
TIA1 Takifugu rubripes ENSTRUG00000005456 I 1.000
TIA1 Takifugu rubripes ENSTRUG00000015136 I 0.907
TIAL1 Takifugu rubripes ENSTRUG00000017931 I 0.732
TIAL1 Tarsius syrichta ENSTSYG00000004348 I 0.779
TIA1 Tursiops truncatus ENSTTRG00000001195 I 0.907
TIAL1 Vicugna pacos ENSVPAG00000001240 I 0.761
TIA1 Vicugna pacos ENSVPAG00000007449 I 0.732
tia1 Xenopus tropicalis ENSXETG00000008514 I 0.883
estExt_fgenesh2_pg.C_1430023 Branchiostoma floridae estExt_fgenesh2_pg.C_1430023 I 0.761
gw.406.24.1 Branchiostoma floridae gw.406.24.1 I 0.756