sf3b14 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000018204 T42916_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000039475 RRM 21 88

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

143 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
1600010087 Ostreococcus tauri 1600010087 N 0.000
29868.m000351 Ricinus communis 29868.m000351 N 0.750
AAEL005909 Aedes aegypti AAEL005909 N 0.926
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.824
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.754
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.779
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.779
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.750
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.754
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.926
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.926
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.739
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.882
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.882
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.956
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.956
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.754
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.794
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.750
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.750
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.765
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.765
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.735
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.926
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.779
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.706
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.824
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.826
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.754
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.750
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.794
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.794
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.750
ISCW024082 Ixodes scapularis ISCW024082 N 0.941
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.779
MDP0000185506 Malus x domestica MDP0000185506 N 0.750
MDP0000916880 Malus x domestica MDP0000916880 N 0.706
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.754
mgf016428m Mimulus guttatus mgf016428m N 0.768
PHUM617060 Pediculus humanus PHUM617060 N 0.941
PITG_10282 Phytophthora infestans PITG_10282 N 0.754
PK21780.1 Cannabis sativa PK21780.1 N 0.750
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.750
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.765
ppa013405m Prunus persica ppa013405m N 0.750
ppa013407m Prunus persica ppa013407m N 0.750
SB01G003790 Sorghum bicolor Sb01g003790 N 0.794
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.754
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.838
Smp_032060 Schistosoma mansoni Smp_032060 N 0.838
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.809
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.779
s_454910 Phytophthora sojae s_454910 N 0.754
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.868