sf3b14 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000018204 T42916_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000039475 RRM 21 88

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

143 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.985
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.985
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.985
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.985
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.985
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.985
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.985
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.985
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.985
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.985
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.985
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.985
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.985
AC008073.5 Homo sapiens ENSG00000115128 N 0.985
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.985
LOC100056247 Equus caballus ENSECAG00000015618 N 0.985
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.985
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.985
sf3b14 Danio rerio ENSDARG00000009753 N 0.985
SF3B14 Gallus gallus ENSGALG00000016501 N 0.985
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.985
AAH57709 Xenopus laevis AAH57709 N 0.985
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.985
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.985
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.985
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.985
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.985
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.985
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.985
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.985
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.985
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.985
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.956
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.956
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.956
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.956
ISCW024082 Ixodes scapularis ISCW024082 N 0.941
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.941
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.941
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.941
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.941
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.941
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.941
PHUM617060 Pediculus humanus PHUM617060 N 0.941
AAEL005909 Aedes aegypti AAEL005909 N 0.926
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.926
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.926
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.926
AGAP002780 Anopheles gambiae AGAP002780 N 0.912
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.912
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.899
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.897
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.882
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.882
68671 Helobdella robusta 68671 N 0.882
GG14070 Drosophila erecta FBgn0106332 N 0.870
GI13232 Drosophila mojavensis FBgn0135989 N 0.870
GH16287 Drosophila grimshawi FBgn0123758 N 0.870
GF10910 Drosophila ananassae FBgn0087950 N 0.870
GE20495 Drosophila yakuba FBgn0068445 N 0.870
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.870
CG13298 Drosophila melanogaster FBgn0035692 N 0.870
GJ12004 Drosophila virilis FBgn0199256 N 0.870
GL22529 Drosophila persimilis FBgn0160121 N 0.870
GD13137 Drosophila simulans FBgn0184859 N 0.870
GK17258 Drosophila willistoni FBgn0219257 N 0.870
GM13852 Drosophila sechellia FBgn0168783 N 0.870
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.868
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.868
Minc01156 Meloidogyne incognita Minc01156 N 0.853
PPA24922 Pristionchus pacificus PPA24922 N 0.838
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.838
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.838
Smp_032060 Schistosoma mansoni Smp_032060 N 0.838
LOAG_04189 Loa loa LOAG_04189 N 0.826
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.826
CBN08400 Caenorhabditis brenneri CBN08400 N 0.824
CBG06987 Caenorhabditis briggsae CBG06987 N 0.824
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.824
CJA01433 Caenorhabditis japonica CJA01433 N 0.824
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.824
CRE22109 Caenorhabditis remanei CRE22109 N 0.824
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.824
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.809
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.797
SB01G003790 Sorghum bicolor Sb01g003790 N 0.794
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.794
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.794
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.794
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.779
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.779
TA13725 Theileria annulata TA13725 N 0.779
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.779
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.779
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.779
mgf016428m Mimulus guttatus mgf016428m N 0.768
EDO06533.1 Babesia bovis EDO06533.1 N 0.765
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.765
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.765
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.765
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.754
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.754
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.754
PITG_10282 Phytophthora infestans PITG_10282 N 0.754
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.754
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.754
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.754
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.754
s_454910 Phytophthora sojae s_454910 N 0.754
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.754
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.750
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.750
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.750
29868.m000351 Ricinus communis 29868.m000351 N 0.750
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.750
MDP0000185506 Malus x domestica MDP0000185506 N 0.750
ppa013405m Prunus persica ppa013405m N 0.750
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.750
PK21780.1 Cannabis sativa PK21780.1 N 0.750
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.750
ppa013407m Prunus persica ppa013407m N 0.750
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.739
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.739
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.739
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.739
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.739
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.739
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.735
TP02_0539 Theileria parva TP02_0539 N 0.735
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.735
PFL1200c Plasmodium falciparum PFL1200c N 0.721
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.721
PVX_123875 Plasmodium vivax PVX_123875 N 0.721
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.721
PY07239 Plasmodium yoelii PY07239 N 0.721
32497 Aureococcus anophagefferens 32497 N 0.716
estExt_fgenesh1_pg.C_120176 Monosiga brevicollis estExt_fgenesh1_pg.C_120176 N 0.710
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.710
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.710
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.706
CMU_001200 Cryptosporidium muris CMU_001200 N 0.706
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.706
MDP0000916880 Malus x domestica MDP0000916880 N 0.706