GI18654 (Drosophila mojavensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0141393 T43623_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.904
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.716
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.712
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.712
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.712
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0167871 RRM 4 74
FBpp0167871 RRM 92 161
FBpp0167871 RRM 185 255
FBpp0167871 RRM 289 358

Links

Other RRM family RBPs
Other Drosophila mojavensis RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30055.m001569 Ricinus communis 30055.m001569 N 0.000
cassava19191.valid.m1 Manihot esculenta cassava19191.valid.m1 N 0.000
cassava19192.valid.m1 Manihot esculenta cassava19192.valid.m1 N 0.000
cassava21692.m1 Manihot esculenta cassava21692.m1 N 0.000
cassava21693.m1 Manihot esculenta cassava21693.m1 N 0.000
cassava29630.valid.m1 Manihot esculenta cassava29630.valid.m1 N 0.000
Cucsa.185730 Cucumis sativus Cucsa.185730 N 0.000
Glyma03g35450.1 Glycine max Glyma03g35450.1 N 0.000
Glyma11g18940.1 Glycine max Glyma11g18940.1 N 0.000
GSVIVG00036119001 Vitis vinifera GSVIVG00036119001 N 0.000
MDP0000181657 Malus x domestica MDP0000181657 N 0.000
MDP0000250854 Malus x domestica MDP0000250854 N 0.000
MDP0000851531 Malus x domestica MDP0000851531 N 0.000
Medtr7g009690 Medicago truncatula Medtr7g009690 N 0.000
mgf001576m Mimulus guttatus mgf001576m N 0.000
PDK_20s1316982g002 Phoenix dactylifera PDK_20s1316982g002 N 0.000
PK05405.1 Cannabis sativa PK05405.1 N 0.000
B9MYW2_POPTR Populus trichocarpa POPTR_0004s21210 N 0.000
B9HC85_POPTR Populus trichocarpa POPTR_0006s22890 N 0.000
B9HQ12_POPTR Populus trichocarpa POPTR_0009s16490 N 0.000
B9IIU5_POPTR Populus trichocarpa POPTR_0016s08010 N 0.000
ppa004677m Prunus persica ppa004677m N 0.000
ppa004785m Prunus persica ppa004785m N 0.000