GI18654 (Drosophila mojavensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0141393 T43623_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.904
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.716
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.712
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.712
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.712
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0167871 RRM 4 74
FBpp0167871 RRM 92 161
FBpp0167871 RRM 185 255
FBpp0167871 RRM 289 358

Links

Other RRM family RBPs
Other Drosophila mojavensis RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GJ21671 Drosophila virilis FBgn0208790 I 0.965
GH21052 Drosophila grimshawi FBgn0128514 I 0.961
GK19652 Drosophila willistoni FBgn0221650 I 0.950
GL11548 Drosophila persimilis FBgn0149157 I 0.947
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.943
GF12652 Drosophila ananassae FBgn0089688 I 0.933
GE11925 Drosophila yakuba FBgn0229707 I 0.918
GD11341 Drosophila simulans FBgn0183090 I 0.915
GM21847 Drosophila sechellia FBgn0176724 I 0.911
GG21846 Drosophila erecta FBgn0114024 I 0.911
pAbp Drosophila melanogaster FBgn0261619 D 0.911
AAEL010318 Aedes aegypti AAEL010318 I 0.819
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.809
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.809
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.805
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.805
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.805
AGAP011092 Anopheles gambiae AGAP011092 I 0.801
PHUM617090 Pediculus humanus PHUM617090 I 0.794
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.794
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.794
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.794
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.787
ISCW014211 Ixodes scapularis ISCW014211 I 0.770
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.752
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.734
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.734
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.734
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.730
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.730
AAH73435 Xenopus laevis AAH73435 I 0.729
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.729
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.729
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.727
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.727
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.725
LOC100054235 Equus caballus ENSECAG00000009396 I 0.722
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.722
PABPC4 Gallus gallus ENSGALG00000003800 I 0.722
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.722
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.722
PABPC4 Homo sapiens ENSG00000090621 D 0.722
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.722
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.722
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.722
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.722
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.722
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.722
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.722
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.722
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.722
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.722
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.722
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.722
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.722
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.722
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.720
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.718
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.718
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.718
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.718
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.718
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.718
CAA40721 Xenopus laevis CAA40721 I 0.718
P20965 Xenopus laevis P20965 I 0.718
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.718
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.718
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.718
AAH52100 Xenopus laevis AAH52100 I 0.718
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.718
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.718
PABPC1 Homo sapiens ENSG00000070756 D 0.718
pabpc4 Danio rerio ENSDARG00000059259 I 0.718
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.718
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.718
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.718
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.718
CBN04295 Caenorhabditis brenneri CBN04295 I 0.716
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.716
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.716
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.715
AAA60936 Xenopus laevis AAA60936 I 0.715
AAH72110 Xenopus laevis AAH72110 I 0.715
AAI08463 Xenopus laevis AAI08463 I 0.715
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.715
Gm10110 Mus musculus ENSMUSG00000062093 I 0.715
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.715
pabpc1a Danio rerio ENSDARG00000017219 I 0.715
Q6IP09 Xenopus laevis Q6IP09 I 0.715
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.715
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.713
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.713
pabpc1b Danio rerio ENSDARG00000021140 I 0.712
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.711
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.711
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.711
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.711
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.711
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.711
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.709
CBG02207 Caenorhabditis briggsae CBG02207 N 0.709
CJA17800 Caenorhabditis japonica CJA17800 N 0.706
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.706
185682 Helobdella robusta 185682 I 0.706
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.704
Bm1_06880 Brugia malayi Bm1_06880 I 0.702
LOAG_01058 Loa loa LOAG_01058 I 0.702
Bm1_16080 Brugia malayi Bm1_16080 I 0.702
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.701
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.701
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.701
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.701