B9NB27_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0016s11470 T45681_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s11470.1 RRM 90 159
POPTR_0016s11470.2 RRM 90 159

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29005.m000257 Ricinus communis 29005.m000257 N 0.700
29876.m000260 Ricinus communis 29876.m000260 N 0.843
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.829
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.757
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 0.771
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 0.771
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.871
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.729
BRADI1G66430 Brachypodium distachyon BRADI1G66430 N 0.800
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.714
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.800
cassava30010.valid.m1 Manihot esculenta cassava30010.valid.m1 N 0.714
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 0.714
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 0.714
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.857
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.857
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.857
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 0.729
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 0.729
cassava6599.valid.m1 Manihot esculenta cassava6599.valid.m1 N 0.757
cassava9472.m1 Manihot esculenta cassava9472.m1 N 0.729
cassava9473.m1 Manihot esculenta cassava9473.m1 N 0.729
Cucsa.137040 Cucumis sativus Cucsa.137040 N 0.700
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.800
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.786
estExt_fgenesh1_pg.C_3900014 Physcomitrella patens estExt_fgenesh1_pg.C_3900014 N 0.800
e_gw1.0.323.1 Selaginella moellendorfii e_gw1.0.323.1 N 0.757
e_gw1.4.224.1 Physcomitrella patens e_gw1.4.224.1 N 0.800
e_gw1.77.52.1 Physcomitrella patens e_gw1.77.52.1 N 0.800
fgenesh1_pm.scaffold_57000010 Physcomitrella patens fgenesh1_pm.scaffold_57000010 N 0.771
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.829
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.757
fgeneshTA2_pg.C_scaffold_2000899 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000899 N 0.714
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.829
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.843
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.814
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.843
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.843
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.743
GSVIVG00016588001 Vitis vinifera GSVIVG00016588001 N 0.714
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.871
GSVIVG00030785001 Vitis vinifera GSVIVG00030785001 N 0.729
gw1.1.189.1 Selaginella moellendorfii gw1.1.189.1 N 0.714
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.871
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.729
LOC_Os11g01020 Oryza sativa LOC_Os11g01020 N 0.771
LOC_Os12g01010 Oryza sativa LOC_Os12g01010 N 0.800
MDP0000119945 Malus x domestica MDP0000119945 N 0.843
MDP0000153894 Malus x domestica MDP0000153894 N 0.843
MDP0000202749 Malus x domestica MDP0000202749 N 0.700
MDP0000251188 Malus x domestica MDP0000251188 N 0.843
MDP0000320467 Malus x domestica MDP0000320467 N 0.743
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.843
mgf000319m Mimulus guttatus mgf000319m N 0.729
mgf010207m Mimulus guttatus mgf010207m N 0.829
mgf013964m Mimulus guttatus mgf013964m N 0.757
PK16300.1 Cannabis sativa PK16300.1 N 0.729
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.814
B9HTL2_POPTR Populus trichocarpa POPTR_0010s21510 N 0.743
ppa009623m Prunus persica ppa009623m N 0.700
ppa010358m Prunus persica ppa010358m N 0.871
SB01G039330 Sorghum bicolor Sb01g039330 N 0.871
SB07G020860 Sorghum bicolor Sb07g020860 N 0.743