90208 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 90208 T48897_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.801
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
90208 RRM 3 72
90208 RRM 260 330

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
62054 Helobdella robusta 62054 I 0.745
AAEL014033 Aedes aegypti AAEL014033 I 0.780
AGAP004950 Anopheles gambiae AGAP004950 I 0.787
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.801
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.752
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.702
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.745
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.709
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.702
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.745
BRUNOL6 Homo sapiens ENSG00000140488 D 0.709
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.745
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.759
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.780
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.787
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.732
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.702
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.787
HEXA Macaca mulatta ENSMMUG00000010687 I 0.709
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.745
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.752
Celf6 Mus musculus ENSMUSG00000032297 I 0.716
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.780
CELF2 Ornithorhynchus anatinus ENSOANG00000015432 I 0.702
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.702
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.709
CELF6 Oryzias latipes ENSORLG00000013392 I 0.759
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.709
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.780
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.787
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.752
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.723
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.759
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.752
estExt_fgenesh2_pg.C_sca_1310025 Lottia gigantea estExt_fgenesh2_pg.C_sca_1310025 I 0.759
estExt_fgenesh2_pm.C_730008 Branchiostoma floridae estExt_fgenesh2_pm.C_730008 I 0.723
GF10965 Drosophila ananassae FBgn0088005 I 0.801
GG13757 Drosophila erecta FBgn0106020 I 0.801
GH14684 Drosophila grimshawi FBgn0122160 I 0.801
GI13095 Drosophila mojavensis FBgn0135852 I 0.801
GL21647 Drosophila persimilis FBgn0159240 I 0.773
GM24582 Drosophila sechellia FBgn0179445 I 0.801
GD12651 Drosophila simulans FBgn0184378 I 0.801
GJ13842 Drosophila virilis FBgn0201061 I 0.801
GK17101 Drosophila willistoni FBgn0219100 I 0.809
GE20053 Drosophila yakuba FBgn0237378 I 0.801
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.794
bru-3 Drosophila melanogaster FBgn0262350 D 0.801
LOAG_05508 Loa loa LOAG_05508 I 0.745
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.794
PHUM315130 Pediculus humanus PHUM315130 I 0.794
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.780
Smp_041280 Schistosoma mansoni Smp_041280 I 0.801
Smp_131780 Schistosoma mansoni Smp_131780 I 0.787