CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LjSGA_021949.1
(
Lotus japonicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
LjSGA_021949.1
T57201_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
0.746
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
0.732
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_021949.1
RRM
130
200
LFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPLDLAVALKEMSGKYVGNRPIK
Links
Other
RRM
family RBPs
Other
Lotus japonicus
RBPs
80 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29680.m001693
Ricinus communis
29680.m001693
I
0.915
A2VDB3
Xenopus laevis
A2VDB3
I
0.732
AAI29698
Xenopus laevis
AAI29698
I
0.732
Ame_R009099
Ailuropoda melanoleuca
Ame_R009099
I
0.746
AT3G04500
Arabidopsis thaliana
AT3G04500-TAIR-G
I
0.859
BGIOSIBCE007866
Oryza indica
BGIOSIBCE007866
I
0.831
BGIOSIBCE028936
Oryza indica
BGIOSIBCE028936
I
0.901
BRADI3G12840
Brachypodium distachyon
BRADI3G12840
I
0.887
BRADI3G49130
Brachypodium distachyon
BRADI3G49130
I
0.845
cassava22669.valid.m1
Manihot esculenta
cassava22669.valid.m1
I
0.915
cassava22670.valid.m1
Manihot esculenta
cassava22670.valid.m1
N
0.764
chr5.LjT18P14.100.nd
Lotus japonicus
chr5.LjT18P14.100.nd
N
0.764
Cucsa.178480
Cucumis sativus
Cucsa.178480
I
0.915
RBM42
Anolis carolinensis
ENSACAG00000005495
I
0.732
RBM42_BOVIN
Bos taurus
ENSBTAG00000013440
I
0.746
RBM42
Canis familiaris
ENSCAFG00000006925
I
0.746
RBM42
Callithrix jacchus
ENSCJAG00000010220
I
0.746
RBM42
Cavia porcellus
ENSCPOG00000012365
I
0.746
rbm42
Danio rerio
ENSDARG00000039910
I
0.732
LOC100051102
Equus caballus
ENSECAG00000018215
I
0.746
RBM42
Erinaceus europaeus
ENSEEUG00000004841
I
0.746
RBM42
Homo sapiens
ENSG00000126254
D
0.746
RBM42
Gasterosteus aculeatus
ENSGACG00000004170
I
0.746
RBM42
Gorilla gorilla
ENSGGOG00000009972
I
0.746
ENSMEUG00000016300
Macropus eugenii
ENSMEUG00000016300
I
0.746
RBM42
Microcebus murinus
ENSMICG00000009880
I
0.746
RBM42
Myotis lucifugus
ENSMLUG00000011334
I
0.746
RBM42
Macaca mulatta
ENSMMUG00000018954
I
0.746
RBM42
Monodelphis domestica
ENSMODG00000013957
I
0.746
Rbm42
Mus musculus
ENSMUSG00000036733
I
0.746
RBM42
Oryctolagus cuniculus
ENSOCUG00000003337
I
0.746
RBM42
Otolemur garnettii
ENSOGAG00000004144
I
0.746
RBM42
Ochotona princeps
ENSOPRG00000001229
I
0.746
RBM42
Oryzias latipes
ENSORLG00000003387
I
0.746
RBM42
Procavia capensis
ENSPCAG00000013053
I
0.746
ENSPPYG00000009871
Pongo pygmaeus
ENSPPYG00000009871
I
0.746
RBM42
Pan troglodytes
ENSPTRG00000010852
I
0.746
RBM42
Pteropus vampyrus
ENSPVAG00000012815
I
0.746
Rbm42
Rattus norvegicus
ENSRNOG00000024278
I
0.746
RBM42
Sorex araneus
ENSSARG00000010724
I
0.746
RBM42
Sus scrofa
ENSSSCG00000002905
I
0.746
RBM42
Spermophilus tridecemlineatus
ENSSTOG00000013050
I
0.746
RBM42
Tetraodon nigroviridis
ENSTNIG00000011669
I
0.746
RBM42
Takifugu rubripes
ENSTRUG00000004663
I
0.746
RBM42
Tarsius syrichta
ENSTSYG00000014688
I
0.746
ENSXETG00000017599
Xenopus tropicalis
ENSXETG00000017599
D
0.732
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.718
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.718
e_gw1.156.67.1
Physcomitrella patens
e_gw1.156.67.1
I
0.859
XM_002884402.1
Arabidopsis lyrata
fgenesh2_kg.3__407__AT3G04500.1
I
0.859
Glyma10g30900.1
Glycine max
Glyma10g30900.1
I
0.930
Glyma11g01300.1
Glycine max
Glyma11g01300.1
I
0.887
Glyma20g36570.1
Glycine max
Glyma20g36570.1
I
0.915
GRMZM2G068255
Zea mays
GRMZM2G068255
I
0.901
GRMZM2G125529
Zea mays
GRMZM2G125529
I
0.831
GSVIVG00016104001
Vitis vinifera
GSVIVG00016104001
I
0.887
GSVIVG00023509001
Vitis vinifera
GSVIVG00023509001
I
0.901
gw1.0.1780.1
Selaginella moellendorfii
gw1.0.1780.1
I
0.819
LOC_Os02g40900
Oryza sativa
LOC_Os02g40900
I
0.817
LOC_Os08g45240
Oryza sativa
LOC_Os08g45240
I
0.901
MDP0000283678
Malus x domestica
MDP0000283678
I
0.915
MDP0000320908
Malus x domestica
MDP0000320908
I
0.915
Medtr1g093610
Medicago truncatula
Medtr1g093610
I
0.901
mgf008981m
Mimulus guttatus
mgf008981m
I
0.750
mgf018525m
Mimulus guttatus
mgf018525m
I
0.775
mgf021739m
Mimulus guttatus
mgf021739m
I
0.901
NCLIV_021850
Neospora caninum
NCLIV_021850
N
0.704
PDK_20s1301681g005
Phoenix dactylifera
PDK_20s1301681g005
I
0.930
PDK_20s1323974g003
Phoenix dactylifera
PDK_20s1323974g003
I
0.887
PDK_20s1329112g001
Phoenix dactylifera
PDK_20s1329112g001
N
0.775
PK16312.1
Cannabis sativa
PK16312.1
I
0.915
B9I5N8_POPTR
Populus trichocarpa
POPTR_0013s04390
I
0.915
B9IPA5_POPTR
Populus trichocarpa
POPTR_0019s03570
I
0.901
ppa010477m
Prunus persica
ppa010477m
I
0.915
Sb02g038420
Sorghum bicolor
Sb02g038420
I
0.901
SB04G026430
Sorghum bicolor
Sb04g026430
I
0.803
SPPG_03010
Spizellomyces punctatus
SPPG_03010
I
0.718
TGGT1_017860
Toxoplasma gondii
TGGT1_017860
N
0.704
TGME49_003080
Toxoplasma gondii
TGME49_003080
N
0.704
TGVEG_046310
Toxoplasma gondii
TGVEG_046310
N
0.704