MDP0000138865 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000138865 T57338_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000138865 RRM 19 89
MDP0000138865 RRM 148 217
MDP0000138865 RRM 390 460

Links

Other RRM family RBPs
Other Malus x domestica RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29647.m002041 Ricinus communis 29647.m002041 N 0.887
AT1G03457 Arabidopsis thaliana AT1G03457-TAIR-G N 0.726
AtRBP-DR1 Arabidopsis thaliana AT4G03110-TAIR-G N 0.789
BGIOSIBCE018791 Oryza indica BGIOSIBCE018791 N 0.780
BRADI2G27260 Brachypodium distachyon BRADI2G27260 N 0.808
BRADI2G60300 Brachypodium distachyon BRADI2G60300 N 0.804
cassava24659.valid.m1 Manihot esculenta cassava24659.valid.m1 N 0.873
cassava29564.valid.m1 Manihot esculenta cassava29564.valid.m1 N 0.887
Cucsa.084710 Cucumis sativus Cucsa.084710 N 0.849
XM_002892115.1 Arabidopsis lyrata fgenesh2_kg.1__275__AT1G03457.2 N 0.741
XM_002872750.1 Arabidopsis lyrata fgenesh2_kg.6__3385__AT4G03110.1 N 0.784
Glyma02g17090.1 Glycine max Glyma02g17090.1 N 0.835
Glyma03g36650.1 Glycine max Glyma03g36650.1 N 0.906
Glyma10g02700.1 Glycine max Glyma10g02700.1 N 0.854
Glyma19g39300.1 Glycine max Glyma19g39300.1 N 0.901
GRMZM2G005459 Zea mays GRMZM2G005459 N 0.790
GRMZM2G177001 Zea mays GRMZM2G177001 N 0.776
GSVIVG00011013001 Vitis vinifera GSVIVG00011013001 N 0.892
LOC_Os01g71200 Oryza sativa LOC_Os01g71200 N 0.794
LOC_Os05g30980 Oryza sativa LOC_Os05g30980 N 0.804
MDP0000123673 Malus x domestica MDP0000123673 N 0.934
mgf007780m Mimulus guttatus mgf007780m N 0.812
mgf010250m Mimulus guttatus mgf010250m N 0.723
PK12631.1 Cannabis sativa PK12631.1 N 0.877
B9GTC1_POPTR Populus trichocarpa POPTR_0002s22730 N 0.844
B9I9Y4_POPTR Populus trichocarpa POPTR_0014s13070 N 0.868
ppa006027m Prunus persica ppa006027m N 0.920
Sb03g045340 Sorghum bicolor Sb03g045340 N 0.804
SB09G018610 Sorghum bicolor Sb09g018610 N 0.785