A7MB98_BOVIN (Bos taurus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSBTAG00000025434 T02277_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.722
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.722
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.722
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.722
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.722
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.722
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.722
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000035611 CCCH ZF 115 141
ENSBTAP00000035611 CCCH ZF 153 179

Links

Other CCCH ZF family RBPs
Other Bos taurus RBPs

161 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YB-1 Homo sapiens ENSG00000065978 D 0.000
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.000
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.000
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.000
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.000
CSDA Spermophilus tridecemlineatus ENSSTOG00000002108 I 0.000
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.000
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.000
YBX1 Procavia capensis ENSPCAG00000008397 I 0.000
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.000
YBX2 Microcebus murinus ENSMICG00000012453 I 0.000
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.000
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.000
CSDA Felis catus ENSFCAG00000018959 I 0.000
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.000
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.000
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.000
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.000
YBX1 Tupaia belangeri ENSTBEG00000015642 N 0.000
Ame_R016026 Ailuropoda melanoleuca Ame_R016026 N 0.000
ybx2 Xenopus tropicalis ENSXETG00000025267 N 0.000
YBX2 Pteropus vampyrus ENSPVAG00000005050 N 0.000
ENSOCUG00000026608 Oryctolagus cuniculus ENSOCUG00000026608 N 0.000
ENSOCUG00000024588 Oryctolagus cuniculus ENSOCUG00000024588 N 0.000
ENSOCUG00000022716 Oryctolagus cuniculus ENSOCUG00000022716 N 0.000
ENSOCUG00000021258 Oryctolagus cuniculus ENSOCUG00000021258 N 0.000
ENSLAFG00000031170 Loxodonta africana ENSLAFG00000031170 N 0.000
ENSGGOG00000023840 Gorilla gorilla ENSGGOG00000023840 N 0.000
CPIJ002248 Culex quinquefasciatus CPIJ002248 N 0.000
CpipJ_CPIJ002248 Culex pipiens CpipJ_CPIJ002248 N 0.000