chr1.CM0088.900.nc (Lotus japonicus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 chr1.CM0088.900.nc T05991_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0088.900.nc CCCH ZF 211 237

Links

Other CCCH ZF family RBPs
Other Lotus japonicus RBPs

243 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AMAG_07778 Allomyces macrogynus AMAG_07778 N 0.000
e_gwh2.2.654.1 Phanerochaete chrysosporium e_gwh2.2.654.1 N 0.000
estExt_fgenesh1_pg.C_70293 Batrachochytrium dendrobatidis estExt_fgenesh1_pg.C_70293 N 0.000
estExt_fgenesh3_pm.C_180006 Postia placenta estExt_fgenesh3_pm.C_180006 N 0.000
estExt_fgenesh4_pg.C_90052 Volvox carteri estExt_fgenesh4_pg.C_90052 N 0.000
estExt_Genewise1Plus.C_70089 Capitella teleta estExt_Genewise1Plus.C_70089 N 0.000
eugene.0700010461 Ostreococcus lucimarinus eugene.0700010461 N 0.000
gw1.1.562.1 Micromonas pusilla gw1.1.562.1 N 0.000
PASA_GEN_0400107 Daphnia pulex PASA_GEN_0400107 N 0.000
EDP43963.1 Malassezia globosa EDP43963.1 N 0.000
e_gw1.07.00.268.1 Ostreococcus tauri e_gw1.07.00.268.1 N 0.000
e_gw1.7.291.1 Tremella mesenterica e_gw1.7.291.1 N 0.000
estExt_fgenesh2_kg.C_20554 Agaricus bisporus estExt_fgenesh2_kg.C_20554 N 0.000
fgenesh1_pm.C_scaffold_4000135 Pleurotus ostreatus fgenesh1_pm.C_scaffold_4000135 N 0.000
fgenesh2_kg.4_#_366_#_2882_1_CFPN Serpula lacrymans fgenesh2_kg.4_#_366_#_2882_1_CFPN N 0.000
Genemark.4150_g Heterobasidion annosum Genemark.4150_g N 0.000
GSTUMT00008009001 Tuber melanosporum GSTUMT00008009001 N 0.000
AAH41273 Xenopus laevis AAH41273 N 0.000
e_gw1.7.303.1 Ostreococcus RCC809 e_gw1.7.303.1 N 0.000
e_gw1.1.3483.1 Schizophyllum commune e_gw1.1.3483.1 N 0.000
AMAG_09721 Allomyces macrogynus AMAG_09721 N 0.000
CNBG_5932 Cryptococcus neoformans CNBG_5932 N 0.000
FVEG_06170 Fusarium verticillioides FVEG_06170 N 0.000
SJAG_00657 Schizosaccharomyces japonicus SJAG_00657 N 0.000
SPPG_02913 Spizellomyces punctatus SPPG_02913 N 0.000
UM03241 Ustilago maydis UM03241 N 0.000
CMR456C Cyanidioschyzon merolae CMR456C N 0.000
amel4_ncbi_hmm4445 Apis mellifera amel4_ncbi_hmm4445 N 0.000
DGIL_AUG5s1009g5t1 Acyrtosiphon pisum DGIL_AUG5s1009g5t1 N 0.000
nasonia_NCBI_hmm386444 Nasonia vitripennis nasonia_NCBI_hmm386444 N 0.000
An02g03350 Aspergillus niger CADANGAG00001848 N 0.000
ANIA_05875 Aspergillus nidulans CADANIAG00007161 N 0.000
ATEG_01441 Aspergillus terreus CADATEAG00000360 N 0.000
KRR1 Oryzias latipes ENSORLG00000019616 N 0.000
GF14827 Drosophila ananassae FBgn0091854 N 0.000
mis3 Schizosaccharomyces pombe SPBC25B2.05 N 0.000
85673 Helobdella robusta 85673 N 0.000
AAH72210 Xenopus laevis AAH72210 N 0.000