CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FUBP3
(
Takifugu rubripes
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSTRUG00000018658
T19665_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000047792
KH
83
145
TEDFKVPDKMVGFIIGKGGEQISRIQLESGCKIQIASDSGGMLDRPCTLTGSPENIELAKRLL
ENSTRUP00000047792
KH
168
232
IQQILIPANKVGLVIGKKGETIKQLQERTGVQMIMIQDDPLPTGADKPLRITGDPQKVQQARELV
ENSTRUP00000047792
KH
259
321
TLDVVVPRFAVGIIIGRNGEMIRKIQNDAGVRIQFKQDDGISPERVAQVMGQLDHCHHAVHII
ENSTRUP00000047792
KH
356
421
EVTYAVPADKCGLVIGKGGETIKNIKEQSRAHVELQRNPPPNTDPSVRIFSIRGTPQQLEKARQLI
ENSTRUP00000047793
KH
80
142
TEDFKVPDKMVGFIIGKGGEQISRIQLESGCKIQIASDSGGMLDRPCTLTGSPENIELAKRLL
ENSTRUP00000047793
KH
165
229
IQQILIPANKVGLVIGKKGETIKQLQERTGVQMIMIQDDPLPTGADKPLRITGDPQKVQQARELV
ENSTRUP00000047793
KH
256
318
TLDVVVPRFAVGIIIGRNGEMIRKIQNDAGVRIQFKQDDGISPERVAQVMGQLDHCHHAVHII
ENSTRUP00000047793
KH
353
418
EVTYAVPADKCGLVIGKGGETIKNIKEQSRAHVELQRNPPPNTDPSVRIFSIRGTPQQLEKARQLI
ENSTRUP00000047794
KH
80
142
TEDFKVPDKMVGFIIGKGGEQISRIQLESGCKIQIASDSGGMLDRPCTLTGSPENIELAKRLL
ENSTRUP00000047794
KH
165
229
IQQILIPANKVGLVIGKKGETIKQLQERTGVQMIMIQDDPLPTGADKPLRITGDPQKVQQARELV
ENSTRUP00000047794
KH
256
318
TLDVVVPRFAVGIIIGRNGEMIRKIQNDAGVRIQFKQDDGISPERVAQVMGQLDHCHHAVHII
ENSTRUP00000047794
KH
353
418
EVTYAVPADKCGLVIGKGGETIKNIKEQSRAHVELQRNPPPNTDPSVRIFSIRGTPQQLEKARQLI
ENSTRUP00000047795
KH
98
160
TEDFKVPDKMVGFIIGKGGEQISRIQLESGCKIQIASDSGGMLDRPCTLTGSPENIELAKRLL
ENSTRUP00000047795
KH
183
247
IQQILIPANKVGLVIGKKGETIKQLQERTGVQMIMIQDDPLPTGADKPLRITGDPQKVQQARELV
ENSTRUP00000047795
KH
274
336
TLDVVVPRFAVGIIIGRNGEMIRKIQNDAGVRIQFKQDDGISPERVAQVMGQLDHCHHAVHII
ENSTRUP00000047795
KH
371
436
EVTYAVPADKCGLVIGKGGETIKNIKEQSRAHVELQRNPPPNTDPSVRIFSIRGTPQQLEKARQLI
ENSTRUP00000047796
KH
85
147
TEDFKVPDKMVGFIIGKGGEQISRIQLESGCKIQIASDSGGMLDRPCTLTGSPENIELAKRLL
ENSTRUP00000047796
KH
170
234
IQQILIPANKVGLVIGKKGETIKQLQERTGVQMIMIQDDPLPTGADKPLRITGDPQKVQQARELV
ENSTRUP00000047796
KH
261
323
TLDVVVPRFAVGIIIGRNGEMIRKIQNDAGVRIQFKQDDGISPERVAQVMGQLDHCHHAVHII
ENSTRUP00000047796
KH
358
423
EVTYAVPADKCGLVIGKGGETIKNIKEQSRAHVELQRNPPPNTDPSVRIFSIRGTPQQLEKARQLI
Links
Other
KH
family RBPs
Other
Takifugu rubripes
RBPs
73 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAN77161
Xenopus laevis
AAN77161
I
0.702
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.717
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.713
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.713
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.713
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.717
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.709
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.717
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.713
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.705
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.713
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.713
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.713
AAI69815
Xenopus laevis
AAI69815
I
0.717
AAH70981
Xenopus laevis
AAH70981
I
0.717
AAH44277
Xenopus laevis
AAH44277
I
0.705
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.710
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.721
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.713
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.713
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.713
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.705
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.713
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.717
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.721
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.713
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.713
FUBP1
Equus caballus
ENSECAG00000010867
I
0.713
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.713
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.713
fubp1
Danio rerio
ENSDARG00000029248
I
0.709
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.713
FUBP1
Homo sapiens
ENSG00000162613
I
0.717
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.710
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.713
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.794
FUBP3
Sus scrofa
ENSSSCG00000005702
N
0.704
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.825
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.802
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.848
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.981
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.782
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.809
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.833
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.813
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.809
AAH60400
Xenopus laevis
AAH60400
N
0.825
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.802
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.805
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.813
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.805
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.825
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.805
FUBP3
Gasterosteus aculeatus
ENSGACG00000016704
N
0.942
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.833
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.751
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.817
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.833
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.809
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.794
FUBP3
Homo sapiens
ENSG00000107164
N
0.805
FUBP3
Felis catus
ENSFCAG00000005113
N
0.805
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.805
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.805
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.837
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.786
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.805
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.942
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.802
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.782
FUBP3
Otolemur garnettii
ENSOGAG00000007555
N
0.708
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.805