Fubp1 (Mus musculus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSMUSG00000028034 T19131_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.770
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.770
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.770
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.770
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000078460 KH 119 181
ENSMUSP00000078460 KH 204 268
ENSMUSP00000078460 KH 294 356
ENSMUSP00000078460 KH 395 460
ENSMUSP00000101727 KH 97 159
ENSMUSP00000101727 KH 182 246
ENSMUSP00000101727 KH 272 334
ENSMUSP00000101727 KH 373 438

Links

Other KH family RBPs
Other Mus musculus RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.996
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.996
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.996
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.996
FUBP1 Cavia porcellus ENSCPOG00000002757 I 0.996
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.996
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.996
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.996
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 0.996
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.996
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.996
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.996
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.996
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.996
FUBP1 Equus caballus ENSECAG00000010867 I 0.996
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.992
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.992
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.992
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.992
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.992
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.992
FUBP1 Homo sapiens ENSG00000162613 I 0.992
FUBP1 Tarsius syrichta ENSTSYG00000000148 I 0.988
FUBP1 Anolis carolinensis ENSACAG00000006310 I 0.988
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.985
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.984
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.981
FUBP1 Taeniopygia guttata ENSTGUG00000006841 I 0.970
fubp1 Xenopus tropicalis ENSXETG00000013137 I 0.938
FUBP1 Oryctolagus cuniculus ENSOCUG00000002225 I 0.923
AAH70981 Xenopus laevis AAH70981 I 0.922
AAI69815 Xenopus laevis AAI69815 I 0.922
AAH44277 Xenopus laevis AAH44277 I 0.914
AAN77161 Xenopus laevis AAN77161 I 0.895
FUBP1 Ochotona princeps ENSOPRG00000001175 N 0.888
ENSGACG00000016563 Gasterosteus aculeatus ENSGACG00000016563 I 0.861
ENSORLG00000003540 Oryzias latipes ENSORLG00000003540 I 0.860
ENSTRUG00000004615 Takifugu rubripes ENSTRUG00000004615 I 0.860
fubp1 Danio rerio ENSDARG00000029248 I 0.848
FUBP1 Microcebus murinus ENSMICG00000014463 N 0.840
FUBP1 Pteropus vampyrus ENSPVAG00000014637 N 0.825
FUBP3 Cavia porcellus ENSCPOG00000010315 N 0.795
FUBP3 Microcebus murinus ENSMICG00000015452 N 0.795
LOC100399862 Callithrix jacchus ENSCJAG00000020542 N 0.795
FUBP3 Pteropus vampyrus ENSPVAG00000001510 N 0.795
FUBP3 Gorilla gorilla ENSGGOG00000011318 N 0.791
ENSPPYG00000019693 Pongo pygmaeus ENSPPYG00000019693 N 0.791
FUBP3 Pan troglodytes ENSPTRG00000021474 N 0.791
FUBP3 Macaca mulatta ENSMMUG00000008249 N 0.791
FUBP3 Homo sapiens ENSG00000107164 N 0.791
Ame_R003042 Ailuropoda melanoleuca Ame_R003042 N 0.791
FUBP3 Ornithorhynchus anatinus ENSOANG00000001042 N 0.787
A6QP83_BOVIN Bos taurus ENSBTAG00000013072 N 0.787
FUBP3 Ochotona princeps ENSOPRG00000008648 N 0.787
Fubp3 Rattus norvegicus ENSRNOG00000009139 N 0.787
FUBP3 Canis familiaris ENSCAFG00000019942 N 0.787
FUBP3 Loxodonta africana ENSLAFG00000011611 N 0.787
Q5ZM76_CHICK Gallus gallus ENSGALG00000003941 N 0.783
FUBP3 Felis catus ENSFCAG00000005113 N 0.783
FUBP3 Meleagris gallopavo ENSMGAG00000005342 N 0.783
Fubp3 Mus musculus ENSMUSG00000026843 N 0.783
fubp3 Xenopus tropicalis ENSXETG00000001344 N 0.779
AAH60400 Xenopus laevis AAH60400 N 0.779
FUBP3 Taeniopygia guttata ENSTGUG00000004662 N 0.779
FUBP3 Dasypus novemcinctus ENSDNOG00000014533 N 0.775
FUBP3 Monodelphis domestica ENSMODG00000012105 N 0.775
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.770
LOC100065608 Equus caballus ENSECAG00000018305 I 0.770
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.770
KHSRP Felis catus ENSFCAG00000003731 I 0.770
KHSRP Homo sapiens ENSG00000088247 D 0.770
Khsrp Mus musculus ENSMUSG00000007670 I 0.770
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.770
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.770
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.770
LOC505564 Bos taurus ENSBTAG00000021018 I 0.770
KHSRP Canis familiaris ENSCAFG00000018667 I 0.770
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.770
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.770
KHSRP Sus scrofa ENSSSCG00000013538 I 0.770
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.770
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.770
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.770
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.770
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.770
FUBP3 Procavia capensis ENSPCAG00000001717 N 0.767
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.767
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.767
FUBP3 Tetraodon nigroviridis ENSTNIG00000005858 N 0.764
KHSRP Microcebus murinus ENSMICG00000007863 I 0.763
FUBP3 Takifugu rubripes ENSTRUG00000013259 N 0.760
FUBP3 Oryzias latipes ENSORLG00000017565 N 0.760
LOC100069755 Equus caballus ENSECAG00000011500 N 0.756
ENSDARG00000007049 Danio rerio ENSDARG00000007049 N 0.752
FUBP3 Myotis lucifugus ENSMLUG00000008743 N 0.752
AAI61696 Xenopus laevis AAI61696 I 0.751
AAN77160 Xenopus laevis AAN77160 I 0.747
AAI69923 Xenopus laevis AAI69923 I 0.747
KHSRP Danio rerio ENSDARG00000026489 I 0.739
FUBP3 Gasterosteus aculeatus ENSGACG00000016704 N 0.729
KHSRP Macropus eugenii ENSMEUG00000016601 I 0.728
KHSRP Gasterosteus aculeatus ENSGACG00000012422 I 0.728
FUBP3 Tetraodon nigroviridis ENSTNIG00000009019 N 0.721
FUBP3 Oryzias latipes ENSORLG00000007103 N 0.717
KHSRP Monodelphis domestica ENSMODG00000001952 I 0.716
KHSRP Oryzias latipes ENSORLG00000011882 I 0.712
FUBP3 Takifugu rubripes ENSTRUG00000018658 N 0.709
KHSRP Gasterosteus aculeatus ENSGACG00000018990 I 0.704
KHSRP Takifugu rubripes ENSTRUG00000010395 I 0.704