CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RAVER2
(
Equus caballus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSECAG00000022014
T36697_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSECAP00000019470
RRM
7
52
LQDYELKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI
ENSECAP00000019470
RRM
62
131
LCITNLPTSFTLEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLQLLGKQLGASAL
ENSECAP00000019470
RRM
151
221
LCIDKLPSDYRDSEELLQVFSSIHKPVFCQLAQDEGSYVGGFAVVEYNTAEHAEEVQQAADGMTIKGSKVQ
Links
Other
RRM
family RBPs
Other
Equus caballus
RBPs
26 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BDBG_03236
Blastomyces dermatitidis
BDBG_03236
N
0.000
estExt_GeneWisePlus.C_20165
Trichoderma reesei
estExt_GeneWisePlus.C_20165
N
0.000
estExt_Genewise1Plus.C_210177
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_210177
N
0.000
estExt_Genewise1Plus.C_140444
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_140444
N
0.000
e_gw1.2.59.1
Trichoderma atroviride
e_gw1.2.59.1
N
0.000
ATEG_01323
Aspergillus terreus
CADATEAG00002653
N
0.000
ACLA_074000
Aspergillus clavatus
CADACLAG00007261
N
0.000
UREG_06534
Uncinocarpus reesii
UREG_06534
N
0.000
TESG_05929
Trichophyton tonsurans
TESG_05929
N
0.000
TERG_04920
Trichophyton rubrum
TERG_04920
N
0.000
TEQG_01206
Trichophyton equinum
TEQG_01206
N
0.000
PABG_06460
Paracoccidioides brasiliensis
PABG_06460
N
0.000
MGYG_03096
Microsporum gypseum
MGYG_03096
N
0.000
MCYG_03492
Microsporum canis
MCYG_03492
N
0.000
HCAG_05999
Histoplasma capsulatum
HCAG_05999
N
0.000
FVEG_06144
Fusarium verticillioides
FVEG_06144
N
0.000
FOXG_08528
Fusarium oxysporum
FOXG_08528
N
0.000
FGSG_06181
Fusarium graminearum
FGSG_06181
N
0.000
Pc12g11760
Penicillium chrysogenum
Pc12g11760
N
0.000